Gene : Phvul.002G091200 P. vulgaris v2.1
Defline:  (1 of 2) K03681 - exosome complex component RRP40 (RRP40, EXOSC3) Genomic Order:  913
Name:  ? Phvul.002G091200 Secondary Identifier:  ? PAC:37177763
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G091200 0.5kb upstream 0.5kb upstream 7685 true Chr02: 15847748-15855432 Phaseolus vulgaris
Phvul.002G091200 0.5kb upstream 0.5kb upstream 500 false Chr02: 15854933-15855432 Phaseolus vulgaris
Phvul.002G091200 0.5kb downstream 0.5kb downstream 7685 true Chr02: 15847248-15854932 Phaseolus vulgaris
Phvul.002G091200 0.5kb downstream 0.5kb downstream 500 false Chr02: 15847248-15847747 Phaseolus vulgaris
Phvul.002G091200 1.0kb upstream 1.0kb upstream 8185 true Chr02: 15847748-15855932 Phaseolus vulgaris
Phvul.002G091200 1.0kb upstream 1.0kb upstream 1000 false Chr02: 15854933-15855932 Phaseolus vulgaris
Phvul.002G091200 1.0kb downstream 1.0kb downstream 8185 true Chr02: 15846748-15854932 Phaseolus vulgaris
Phvul.002G091200 1.0kb downstream 1.0kb downstream 1000 false Chr02: 15846748-15847747 Phaseolus vulgaris
Phvul.002G091200 2.0kb upstream 2.0kb upstream 9185 true Chr02: 15847748-15856932 Phaseolus vulgaris
Phvul.002G091200 2.0kb upstream 2.0kb upstream 2000 false Chr02: 15854933-15856932 Phaseolus vulgaris
Phvul.002G091200 2.0kb downstream 2.0kb downstream 9185 true Chr02: 15845748-15854932 Phaseolus vulgaris
Phvul.002G091200 2.0kb downstream 2.0kb downstream 2000 false Chr02: 15845748-15847747 Phaseolus vulgaris
Phvul.002G091200 5.0kb upstream 5.0kb upstream 12185 true Chr02: 15847748-15859932 Phaseolus vulgaris
Phvul.002G091200 5.0kb upstream 5.0kb upstream 5000 false Chr02: 15854933-15859932 Phaseolus vulgaris
Phvul.002G091200 5.0kb downstream 5.0kb downstream 12185 true Chr02: 15842748-15854932 Phaseolus vulgaris
Phvul.002G091200 5.0kb downstream 5.0kb downstream 5000 false Chr02: 15842748-15847747 Phaseolus vulgaris
Phvul.002G091200 10.0kb upstream 10.0kb upstream 17185 true Chr02: 15847748-15864932 Phaseolus vulgaris
Phvul.002G091200 10.0kb upstream 10.0kb upstream 10000 false Chr02: 15854933-15864932 Phaseolus vulgaris
Phvul.002G091200 10.0kb downstream 10.0kb downstream 17185 true Chr02: 15837748-15854932 Phaseolus vulgaris
Phvul.002G091200 10.0kb downstream 10.0kb downstream 10000 false Chr02: 15837748-15847747 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301974 5265 Fabidae View MSA
124061201 5270 Rosid View MSA
123736741 5271 Pentapetalae View MSA
122789639 5272 Eudicot View MSA
122045630 5273 Angiosperm View MSA
121344862 5274 Embryophyte View MSA
123428759 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.10779 0.0 9.92074    
cufflinks 4.20414 0.0 13.0243   High
cufflinks 2.4236 0.0 7.9568    
cufflinks 4.46702 0.0 13.8717   High
cufflinks 2.74756 0.0 9.01957    
cufflinks 3.27722 0.0 10.4245    
cufflinks 2.65116 0.0 8.68404    
cufflinks 4.42907 0.0 13.5912   High
cufflinks 1.84801 0.0 6.31166   Low
cufflinks 1.55603 0.0 5.39575   Low
cufflinks 2.18208 0.0 7.342    

0 Strain