Gene : Phvul.002G153700 P. vulgaris v2.1
Defline:  (1 of 1) K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) Genomic Order:  1541
Name:  ? Phvul.002G153700 Secondary Identifier:  ? PAC:37175619
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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G153700 0.5kb upstream 0.5kb upstream 12815 true Chr02: 30751719-30764533 Phaseolus vulgaris
Phvul.002G153700 0.5kb upstream 0.5kb upstream 500 false Chr02: 30764034-30764533 Phaseolus vulgaris
Phvul.002G153700 0.5kb downstream 0.5kb downstream 12815 true Chr02: 30751219-30764033 Phaseolus vulgaris
Phvul.002G153700 0.5kb downstream 0.5kb downstream 500 false Chr02: 30751219-30751718 Phaseolus vulgaris
Phvul.002G153700 1.0kb upstream 1.0kb upstream 13315 true Chr02: 30751719-30765033 Phaseolus vulgaris
Phvul.002G153700 1.0kb upstream 1.0kb upstream 1000 false Chr02: 30764034-30765033 Phaseolus vulgaris
Phvul.002G153700 1.0kb downstream 1.0kb downstream 13315 true Chr02: 30750719-30764033 Phaseolus vulgaris
Phvul.002G153700 1.0kb downstream 1.0kb downstream 1000 false Chr02: 30750719-30751718 Phaseolus vulgaris
Phvul.002G153700 2.0kb upstream 2.0kb upstream 14315 true Chr02: 30751719-30766033 Phaseolus vulgaris
Phvul.002G153700 2.0kb upstream 2.0kb upstream 2000 false Chr02: 30764034-30766033 Phaseolus vulgaris
Phvul.002G153700 2.0kb downstream 2.0kb downstream 14315 true Chr02: 30749719-30764033 Phaseolus vulgaris
Phvul.002G153700 2.0kb downstream 2.0kb downstream 2000 false Chr02: 30749719-30751718 Phaseolus vulgaris
Phvul.002G153700 5.0kb upstream 5.0kb upstream 17315 true Chr02: 30751719-30769033 Phaseolus vulgaris
Phvul.002G153700 5.0kb upstream 5.0kb upstream 5000 false Chr02: 30764034-30769033 Phaseolus vulgaris
Phvul.002G153700 5.0kb downstream 5.0kb downstream 17315 true Chr02: 30746719-30764033 Phaseolus vulgaris
Phvul.002G153700 5.0kb downstream 5.0kb downstream 5000 false Chr02: 30746719-30751718 Phaseolus vulgaris
Phvul.002G153700 10.0kb upstream 10.0kb upstream 22315 true Chr02: 30751719-30774033 Phaseolus vulgaris
Phvul.002G153700 10.0kb upstream 10.0kb upstream 10000 false Chr02: 30764034-30774033 Phaseolus vulgaris
Phvul.002G153700 10.0kb downstream 10.0kb downstream 22315 true Chr02: 30741719-30764033 Phaseolus vulgaris
Phvul.002G153700 10.0kb downstream 10.0kb downstream 10000 false Chr02: 30741719-30751718 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302362 5265 Fabidae View MSA
124061833 5270 Rosid View MSA
123751056 5271 Pentapetalae View MSA
122788895 5272 Eudicot View MSA
122051647 5273 Angiosperm View MSA
121348824 5274 Embryophyte View MSA
123381031 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.528564 0.0 2.52534   Low
cufflinks 0.772547 0.0 3.96911    
cufflinks 3.33029 0.0 11.9836   High
cufflinks 0.905257 0.0 4.96451    
cufflinks 1.11579 0.0 5.3015    
cufflinks 1.64328 0.0 5.87747    
cufflinks 1.39536 0.0 5.26055    
cufflinks 1.76291 0.0 7.1427    
cufflinks 1.31556 0.0 5.98794    
cufflinks 1.70582 0.0 7.02893    
cufflinks 0.658587 0.0 3.03743   Low

0 Strain