Gene : Phvul.002G191000 P. vulgaris v2.1
Defline:  (1 of 79) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  1889
Name:  ? Phvul.002G191000 Secondary Identifier:  ? PAC:37175591
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G191000 0.5kb upstream 0.5kb upstream 3278 true Chr02: 35439965-35443242 Phaseolus vulgaris
Phvul.002G191000 0.5kb upstream 0.5kb upstream 500 false Chr02: 35439965-35440464 Phaseolus vulgaris
Phvul.002G191000 0.5kb downstream 0.5kb downstream 3278 true Chr02: 35440465-35443742 Phaseolus vulgaris
Phvul.002G191000 0.5kb downstream 0.5kb downstream 500 false Chr02: 35443243-35443742 Phaseolus vulgaris
Phvul.002G191000 1.0kb upstream 1.0kb upstream 3778 true Chr02: 35439465-35443242 Phaseolus vulgaris
Phvul.002G191000 1.0kb upstream 1.0kb upstream 1000 false Chr02: 35439465-35440464 Phaseolus vulgaris
Phvul.002G191000 1.0kb downstream 1.0kb downstream 3778 true Chr02: 35440465-35444242 Phaseolus vulgaris
Phvul.002G191000 1.0kb downstream 1.0kb downstream 1000 false Chr02: 35443243-35444242 Phaseolus vulgaris
Phvul.002G191000 2.0kb upstream 2.0kb upstream 4778 true Chr02: 35438465-35443242 Phaseolus vulgaris
Phvul.002G191000 2.0kb upstream 2.0kb upstream 2000 false Chr02: 35438465-35440464 Phaseolus vulgaris
Phvul.002G191000 2.0kb downstream 2.0kb downstream 4778 true Chr02: 35440465-35445242 Phaseolus vulgaris
Phvul.002G191000 2.0kb downstream 2.0kb downstream 2000 false Chr02: 35443243-35445242 Phaseolus vulgaris
Phvul.002G191000 5.0kb upstream 5.0kb upstream 7778 true Chr02: 35435465-35443242 Phaseolus vulgaris
Phvul.002G191000 5.0kb upstream 5.0kb upstream 5000 false Chr02: 35435465-35440464 Phaseolus vulgaris
Phvul.002G191000 5.0kb downstream 5.0kb downstream 7778 true Chr02: 35440465-35448242 Phaseolus vulgaris
Phvul.002G191000 5.0kb downstream 5.0kb downstream 5000 false Chr02: 35443243-35448242 Phaseolus vulgaris
Phvul.002G191000 10.0kb upstream 10.0kb upstream 12778 true Chr02: 35430465-35443242 Phaseolus vulgaris
Phvul.002G191000 10.0kb upstream 10.0kb upstream 10000 false Chr02: 35430465-35440464 Phaseolus vulgaris
Phvul.002G191000 10.0kb downstream 10.0kb downstream 12778 true Chr02: 35440465-35453242 Phaseolus vulgaris
Phvul.002G191000 10.0kb downstream 10.0kb downstream 10000 false Chr02: 35443243-35453242 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026268 5273 Angiosperm View MSA
122302266 5265 Fabidae View MSA
124063254 5270 Rosid View MSA
123739998 5271 Pentapetalae View MSA
122787628 5272 Eudicot View MSA
121296253 5274 Embryophyte View MSA
123334450 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.310202 0.0 1.14801 Low Low
cufflinks 0.624875 0.0 2.16256    
cufflinks 0.422866 0.0 1.51983 Low  
cufflinks 0.400416 0.0 1.46163 Low  
cufflinks 0.310129 0.0 1.15548 Low Low
cufflinks 0.445503 0.0 1.59573 Low  
cufflinks 0.514652 0.0 1.81925 Low  
cufflinks 0.834354 0.0 2.78131   High
cufflinks 0.478202 0.0 1.70736 Low  
cufflinks 0.646821 0.0 2.23147   High
cufflinks 0.297955 0.0 1.11133 Low Low

0 Strain