Gene : Phvul.002G181900 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11390:SF27 - DNA TOPOISOMERASE Genomic Order:  1800
Name:  ? Phvul.002G181900 Secondary Identifier:  ? PAC:37178436
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G181900 0.5kb upstream 0.5kb upstream 31347 true Chr02: 34181395-34212741 Phaseolus vulgaris
Phvul.002G181900 0.5kb upstream 0.5kb upstream 500 false Chr02: 34181395-34181894 Phaseolus vulgaris
Phvul.002G181900 0.5kb downstream 0.5kb downstream 31347 true Chr02: 34181895-34213241 Phaseolus vulgaris
Phvul.002G181900 0.5kb downstream 0.5kb downstream 500 false Chr02: 34212742-34213241 Phaseolus vulgaris
Phvul.002G181900 1.0kb upstream 1.0kb upstream 31847 true Chr02: 34180895-34212741 Phaseolus vulgaris
Phvul.002G181900 1.0kb upstream 1.0kb upstream 1000 false Chr02: 34180895-34181894 Phaseolus vulgaris
Phvul.002G181900 1.0kb downstream 1.0kb downstream 31847 true Chr02: 34181895-34213741 Phaseolus vulgaris
Phvul.002G181900 1.0kb downstream 1.0kb downstream 1000 false Chr02: 34212742-34213741 Phaseolus vulgaris
Phvul.002G181900 2.0kb upstream 2.0kb upstream 32847 true Chr02: 34179895-34212741 Phaseolus vulgaris
Phvul.002G181900 2.0kb upstream 2.0kb upstream 2000 false Chr02: 34179895-34181894 Phaseolus vulgaris
Phvul.002G181900 2.0kb downstream 2.0kb downstream 32847 true Chr02: 34181895-34214741 Phaseolus vulgaris
Phvul.002G181900 2.0kb downstream 2.0kb downstream 2000 false Chr02: 34212742-34214741 Phaseolus vulgaris
Phvul.002G181900 5.0kb upstream 5.0kb upstream 35847 true Chr02: 34176895-34212741 Phaseolus vulgaris
Phvul.002G181900 5.0kb upstream 5.0kb upstream 5000 false Chr02: 34176895-34181894 Phaseolus vulgaris
Phvul.002G181900 5.0kb downstream 5.0kb downstream 35847 true Chr02: 34181895-34217741 Phaseolus vulgaris
Phvul.002G181900 5.0kb downstream 5.0kb downstream 5000 false Chr02: 34212742-34217741 Phaseolus vulgaris
Phvul.002G181900 10.0kb upstream 10.0kb upstream 40847 true Chr02: 34171895-34212741 Phaseolus vulgaris
Phvul.002G181900 10.0kb upstream 10.0kb upstream 10000 false Chr02: 34171895-34181894 Phaseolus vulgaris
Phvul.002G181900 10.0kb downstream 10.0kb downstream 40847 true Chr02: 34181895-34222741 Phaseolus vulgaris
Phvul.002G181900 10.0kb downstream 10.0kb downstream 10000 false Chr02: 34212742-34222741 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301575 5265 Fabidae View MSA
124062763 5270 Rosid View MSA
123739329 5271 Pentapetalae View MSA
122792755 5272 Eudicot View MSA
122047422 5273 Angiosperm View MSA
121351439 5274 Embryophyte View MSA
123426817 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.12645 0.0 8.81975   Low
cufflinks 5.30491 0.0 18.4472    
cufflinks 7.25514 0.0 23.7063   High
cufflinks 1.90961 0.0 6.95176   Low
cufflinks 4.54112 0.0 16.2852    
cufflinks 9.9092 0.0 31.6212   High
cufflinks 4.15952 0.0 14.8095    
cufflinks 4.70017 0.0 16.3214    
cufflinks 3.78715 0.0 13.7168    
cufflinks 6.18922 0.0 20.7196    
cufflinks 2.71497 0.0 9.20248    

0 Strain