Gene : Phvul.003G081400 P. vulgaris v2.1
Defline:  (1 of 8) K15601 - lysine-specific demethylase 3 [EC:1.14.11.-] (KDM3) Genomic Order:  820
Name:  ? Phvul.003G081400 Secondary Identifier:  ? PAC:37146626
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G081400 0.5kb upstream 0.5kb upstream 5499 true Chr03: 13437664-13443162 Phaseolus vulgaris
Phvul.003G081400 0.5kb upstream 0.5kb upstream 500 false Chr03: 13442663-13443162 Phaseolus vulgaris
Phvul.003G081400 0.5kb downstream 0.5kb downstream 5499 true Chr03: 13437164-13442662 Phaseolus vulgaris
Phvul.003G081400 0.5kb downstream 0.5kb downstream 500 false Chr03: 13437164-13437663 Phaseolus vulgaris
Phvul.003G081400 1.0kb upstream 1.0kb upstream 5999 true Chr03: 13437664-13443662 Phaseolus vulgaris
Phvul.003G081400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 13442663-13443662 Phaseolus vulgaris
Phvul.003G081400 1.0kb downstream 1.0kb downstream 5999 true Chr03: 13436664-13442662 Phaseolus vulgaris
Phvul.003G081400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 13436664-13437663 Phaseolus vulgaris
Phvul.003G081400 2.0kb upstream 2.0kb upstream 6999 true Chr03: 13437664-13444662 Phaseolus vulgaris
Phvul.003G081400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 13442663-13444662 Phaseolus vulgaris
Phvul.003G081400 2.0kb downstream 2.0kb downstream 6999 true Chr03: 13435664-13442662 Phaseolus vulgaris
Phvul.003G081400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 13435664-13437663 Phaseolus vulgaris
Phvul.003G081400 5.0kb upstream 5.0kb upstream 9999 true Chr03: 13437664-13447662 Phaseolus vulgaris
Phvul.003G081400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 13442663-13447662 Phaseolus vulgaris
Phvul.003G081400 5.0kb downstream 5.0kb downstream 9999 true Chr03: 13432664-13442662 Phaseolus vulgaris
Phvul.003G081400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 13432664-13437663 Phaseolus vulgaris
Phvul.003G081400 10.0kb upstream 10.0kb upstream 14999 true Chr03: 13437664-13452662 Phaseolus vulgaris
Phvul.003G081400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 13442663-13452662 Phaseolus vulgaris
Phvul.003G081400 10.0kb downstream 10.0kb downstream 14999 true Chr03: 13427664-13442662 Phaseolus vulgaris
Phvul.003G081400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 13427664-13437663 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302562 5265 Fabidae View MSA
124073545 5270 Rosid View MSA
123747808 5271 Pentapetalae View MSA
122796242 5272 Eudicot View MSA
122050393 5273 Angiosperm View MSA
121349542 5274 Embryophyte View MSA
123425923 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.75624 0.0 5.27575    
cufflinks 1.90818 0.0 5.69625    
cufflinks 14.2033 0.0 36.7151   High
cufflinks 1.21297 0.0 3.85161   Low
cufflinks 4.01372 0.0 11.1984    
cufflinks 5.52122 0.0 14.8469    
cufflinks 3.81166 0.0 10.5835    
cufflinks 8.56135 0.0 22.3151   High
cufflinks 3.0188 0.0 8.58253    
cufflinks 1.5512 0.0 4.75285    
cufflinks 2.40935 0.0 7.05445    

0 Strain