Gene : Phvul.003G242900 P. vulgaris v2.1
Defline:  (1 of 2) PTHR12565//PTHR12565:SF177 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  2464
Name:  ? Phvul.003G242900 Secondary Identifier:  ? PAC:37145704
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G242900 0.5kb upstream 0.5kb upstream 3978 true Chr03: 47815597-47819574 Phaseolus vulgaris
Phvul.003G242900 0.5kb upstream 0.5kb upstream 500 false Chr03: 47815597-47816096 Phaseolus vulgaris
Phvul.003G242900 0.5kb downstream 0.5kb downstream 3978 true Chr03: 47816097-47820074 Phaseolus vulgaris
Phvul.003G242900 0.5kb downstream 0.5kb downstream 500 false Chr03: 47819575-47820074 Phaseolus vulgaris
Phvul.003G242900 1.0kb upstream 1.0kb upstream 4478 true Chr03: 47815097-47819574 Phaseolus vulgaris
Phvul.003G242900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 47815097-47816096 Phaseolus vulgaris
Phvul.003G242900 1.0kb downstream 1.0kb downstream 4478 true Chr03: 47816097-47820574 Phaseolus vulgaris
Phvul.003G242900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 47819575-47820574 Phaseolus vulgaris
Phvul.003G242900 2.0kb upstream 2.0kb upstream 5478 true Chr03: 47814097-47819574 Phaseolus vulgaris
Phvul.003G242900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 47814097-47816096 Phaseolus vulgaris
Phvul.003G242900 2.0kb downstream 2.0kb downstream 5478 true Chr03: 47816097-47821574 Phaseolus vulgaris
Phvul.003G242900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 47819575-47821574 Phaseolus vulgaris
Phvul.003G242900 5.0kb upstream 5.0kb upstream 8478 true Chr03: 47811097-47819574 Phaseolus vulgaris
Phvul.003G242900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 47811097-47816096 Phaseolus vulgaris
Phvul.003G242900 5.0kb downstream 5.0kb downstream 8478 true Chr03: 47816097-47824574 Phaseolus vulgaris
Phvul.003G242900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 47819575-47824574 Phaseolus vulgaris
Phvul.003G242900 10.0kb upstream 10.0kb upstream 13478 true Chr03: 47806097-47819574 Phaseolus vulgaris
Phvul.003G242900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 47806097-47816096 Phaseolus vulgaris
Phvul.003G242900 10.0kb downstream 10.0kb downstream 13478 true Chr03: 47816097-47829574 Phaseolus vulgaris
Phvul.003G242900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 47819575-47829574 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312620 5265 Fabidae View MSA
124072056 5270 Rosid View MSA
123752133 5271 Pentapetalae View MSA
122789455 5272 Eudicot View MSA
122048181 5273 Angiosperm View MSA
121348763 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.832845 0.0 3.07187   High
cufflinks 0.493718 0.0 1.90541    
cufflinks 0.326263 0.0 1.29491 Low  
cufflinks 0.822979 0.0 3.03935   High
cufflinks 0.452797 0.0 1.76438 Low  
cufflinks 0.67475 0.0 2.53821    
cufflinks 0.364544 0.0 1.43934 Low  
cufflinks 0.479732 0.0 1.85184    
cufflinks 0.551923 0.0 2.11015    
cufflinks 0.260326 0.0 1.05719 Low Low
cufflinks 0.238377 0.0 0.977032 Low Low

0 Strain