Gene : Phvul.003G280400 P. vulgaris v2.1
Defline:  (1 of 5) K12619 - 5'-3' exoribonuclease 2 (XRN2, RAT1) Genomic Order:  2850
Name:  ? Phvul.003G280400 Secondary Identifier:  ? PAC:37144836
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G280400 0.5kb upstream 0.5kb upstream 13841 true Chr03: 51744939-51758779 Phaseolus vulgaris
Phvul.003G280400 0.5kb upstream 0.5kb upstream 500 false Chr03: 51744939-51745438 Phaseolus vulgaris
Phvul.003G280400 0.5kb downstream 0.5kb downstream 13841 true Chr03: 51745439-51759279 Phaseolus vulgaris
Phvul.003G280400 0.5kb downstream 0.5kb downstream 500 false Chr03: 51758780-51759279 Phaseolus vulgaris
Phvul.003G280400 1.0kb upstream 1.0kb upstream 14341 true Chr03: 51744439-51758779 Phaseolus vulgaris
Phvul.003G280400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 51744439-51745438 Phaseolus vulgaris
Phvul.003G280400 1.0kb downstream 1.0kb downstream 14341 true Chr03: 51745439-51759779 Phaseolus vulgaris
Phvul.003G280400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 51758780-51759779 Phaseolus vulgaris
Phvul.003G280400 2.0kb upstream 2.0kb upstream 15341 true Chr03: 51743439-51758779 Phaseolus vulgaris
Phvul.003G280400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 51743439-51745438 Phaseolus vulgaris
Phvul.003G280400 2.0kb downstream 2.0kb downstream 15341 true Chr03: 51745439-51760779 Phaseolus vulgaris
Phvul.003G280400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 51758780-51760779 Phaseolus vulgaris
Phvul.003G280400 5.0kb upstream 5.0kb upstream 18341 true Chr03: 51740439-51758779 Phaseolus vulgaris
Phvul.003G280400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 51740439-51745438 Phaseolus vulgaris
Phvul.003G280400 5.0kb downstream 5.0kb downstream 18341 true Chr03: 51745439-51763779 Phaseolus vulgaris
Phvul.003G280400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 51758780-51763779 Phaseolus vulgaris
Phvul.003G280400 10.0kb upstream 10.0kb upstream 23341 true Chr03: 51735439-51758779 Phaseolus vulgaris
Phvul.003G280400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 51735439-51745438 Phaseolus vulgaris
Phvul.003G280400 10.0kb downstream 10.0kb downstream 23341 true Chr03: 51745439-51768779 Phaseolus vulgaris
Phvul.003G280400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 51758780-51768779 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026403 5273 Angiosperm View MSA
122251508 5265 Fabidae Singleton cluster - no MSA
124066178 5270 Rosid View MSA
123742031 5271 Pentapetalae View MSA
122789000 5272 Eudicot View MSA
123429022 5275 Viridiplantae View MSA
121350547 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.01244 0.0 5.82533   Low
cufflinks 4.59952 0.0 12.3525    
cufflinks 6.23466 0.0 16.3946    
cufflinks 2.24396 0.0 6.45912   Low
cufflinks 5.62536 0.0 14.9566    
cufflinks 4.752 0.0 12.723    
cufflinks 7.04281 0.0 18.3867    
cufflinks 8.79549 0.0 22.7863   High
cufflinks 7.42492 0.0 19.3543    
cufflinks 7.05912 0.0 18.4574    
cufflinks 4.33809 0.0 11.7476    

0 Strain