Gene : Phvul.007G047100 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11864//PTHR11864:SF21 - PRE-MRNA-PROCESSING PROTEIN PRP40 // SUBFAMILY NOT NAMED Genomic Order:  469
Name:  ? Phvul.007G047100 Secondary Identifier:  ? PAC:37167280
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G047100 0.5kb upstream 0.5kb upstream 20909 true Chr07: 3840529-3861437 Phaseolus vulgaris
Phvul.007G047100 0.5kb upstream 0.5kb upstream 500 false Chr07: 3860938-3861437 Phaseolus vulgaris
Phvul.007G047100 0.5kb downstream 0.5kb downstream 20909 true Chr07: 3840029-3860937 Phaseolus vulgaris
Phvul.007G047100 0.5kb downstream 0.5kb downstream 500 false Chr07: 3840029-3840528 Phaseolus vulgaris
Phvul.007G047100 1.0kb upstream 1.0kb upstream 21409 true Chr07: 3840529-3861937 Phaseolus vulgaris
Phvul.007G047100 1.0kb upstream 1.0kb upstream 1000 false Chr07: 3860938-3861937 Phaseolus vulgaris
Phvul.007G047100 1.0kb downstream 1.0kb downstream 21409 true Chr07: 3839529-3860937 Phaseolus vulgaris
Phvul.007G047100 1.0kb downstream 1.0kb downstream 1000 false Chr07: 3839529-3840528 Phaseolus vulgaris
Phvul.007G047100 2.0kb upstream 2.0kb upstream 22409 true Chr07: 3840529-3862937 Phaseolus vulgaris
Phvul.007G047100 2.0kb upstream 2.0kb upstream 2000 false Chr07: 3860938-3862937 Phaseolus vulgaris
Phvul.007G047100 2.0kb downstream 2.0kb downstream 22409 true Chr07: 3838529-3860937 Phaseolus vulgaris
Phvul.007G047100 2.0kb downstream 2.0kb downstream 2000 false Chr07: 3838529-3840528 Phaseolus vulgaris
Phvul.007G047100 5.0kb upstream 5.0kb upstream 25409 true Chr07: 3840529-3865937 Phaseolus vulgaris
Phvul.007G047100 5.0kb upstream 5.0kb upstream 5000 false Chr07: 3860938-3865937 Phaseolus vulgaris
Phvul.007G047100 5.0kb downstream 5.0kb downstream 25409 true Chr07: 3835529-3860937 Phaseolus vulgaris
Phvul.007G047100 5.0kb downstream 5.0kb downstream 5000 false Chr07: 3835529-3840528 Phaseolus vulgaris
Phvul.007G047100 10.0kb upstream 10.0kb upstream 30409 true Chr07: 3840529-3870937 Phaseolus vulgaris
Phvul.007G047100 10.0kb upstream 10.0kb upstream 10000 false Chr07: 3860938-3870937 Phaseolus vulgaris
Phvul.007G047100 10.0kb downstream 10.0kb downstream 30409 true Chr07: 3830529-3860937 Phaseolus vulgaris
Phvul.007G047100 10.0kb downstream 10.0kb downstream 10000 false Chr07: 3830529-3840528 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306677 5265 Fabidae View MSA
124060501 5270 Rosid View MSA
123741058 5271 Pentapetalae View MSA
122797131 5272 Eudicot View MSA
122049454 5273 Angiosperm View MSA
121347556 5274 Embryophyte View MSA
123423988 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.98835 0.0 11.3067   Low
cufflinks 8.50458 0.0 27.3206    
cufflinks 19.5221 0.0 72.4989    
cufflinks 3.59624 0.0 13.4441   Low
cufflinks 10.6428 0.0 38.3227    
cufflinks 17.0963 0.0 55.9938    
cufflinks 14.7285 0.0 47.5041    
cufflinks 17.7703 0.0 65.1152    
cufflinks 12.8403 0.0 45.6747    
cufflinks 19.0984 0.0 63.06    
cufflinks 7.04268 0.0 23.2423    

0 Strain