Gene : Phvul.004G079000 P. vulgaris v2.1
Defline:  (1 of 2) K12580 - CCR4-NOT transcription complex subunit 3 (CNOT3, NOT3) Genomic Order:  818
Name:  ? Phvul.004G079000 Secondary Identifier:  ? PAC:37163135
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G079000 0.5kb upstream 0.5kb upstream 34656 true Chr04: 13900274-13934929 Phaseolus vulgaris
Phvul.004G079000 0.5kb upstream 0.5kb upstream 500 false Chr04: 13900274-13900773 Phaseolus vulgaris
Phvul.004G079000 0.5kb downstream 0.5kb downstream 34656 true Chr04: 13900774-13935429 Phaseolus vulgaris
Phvul.004G079000 0.5kb downstream 0.5kb downstream 500 false Chr04: 13934930-13935429 Phaseolus vulgaris
Phvul.004G079000 1.0kb upstream 1.0kb upstream 35156 true Chr04: 13899774-13934929 Phaseolus vulgaris
Phvul.004G079000 1.0kb upstream 1.0kb upstream 1000 false Chr04: 13899774-13900773 Phaseolus vulgaris
Phvul.004G079000 1.0kb downstream 1.0kb downstream 35156 true Chr04: 13900774-13935929 Phaseolus vulgaris
Phvul.004G079000 1.0kb downstream 1.0kb downstream 1000 false Chr04: 13934930-13935929 Phaseolus vulgaris
Phvul.004G079000 2.0kb upstream 2.0kb upstream 36156 true Chr04: 13898774-13934929 Phaseolus vulgaris
Phvul.004G079000 2.0kb upstream 2.0kb upstream 2000 false Chr04: 13898774-13900773 Phaseolus vulgaris
Phvul.004G079000 2.0kb downstream 2.0kb downstream 36156 true Chr04: 13900774-13936929 Phaseolus vulgaris
Phvul.004G079000 2.0kb downstream 2.0kb downstream 2000 false Chr04: 13934930-13936929 Phaseolus vulgaris
Phvul.004G079000 5.0kb upstream 5.0kb upstream 39156 true Chr04: 13895774-13934929 Phaseolus vulgaris
Phvul.004G079000 5.0kb upstream 5.0kb upstream 5000 false Chr04: 13895774-13900773 Phaseolus vulgaris
Phvul.004G079000 5.0kb downstream 5.0kb downstream 39156 true Chr04: 13900774-13939929 Phaseolus vulgaris
Phvul.004G079000 5.0kb downstream 5.0kb downstream 5000 false Chr04: 13934930-13939929 Phaseolus vulgaris
Phvul.004G079000 10.0kb upstream 10.0kb upstream 44156 true Chr04: 13890774-13934929 Phaseolus vulgaris
Phvul.004G079000 10.0kb upstream 10.0kb upstream 10000 false Chr04: 13890774-13900773 Phaseolus vulgaris
Phvul.004G079000 10.0kb downstream 10.0kb downstream 44156 true Chr04: 13900774-13944929 Phaseolus vulgaris
Phvul.004G079000 10.0kb downstream 10.0kb downstream 10000 false Chr04: 13934930-13944929 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122254229 5265 Fabidae View MSA
124060805 5270 Rosid View MSA
123746198 5271 Pentapetalae View MSA
122787645 5272 Eudicot View MSA
122046852 5273 Angiosperm View MSA
121349524 5274 Embryophyte View MSA
123426579 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.6307 0.0 27.588    
cufflinks 7.55098 0.0 19.8758   Low
cufflinks 13.7092 0.0 35.4359    
cufflinks 5.98842 0.0 16.0819   Low
cufflinks 7.79669 0.0 20.5826   Low
cufflinks 11.9544 0.0 30.9368    
cufflinks 14.6677 0.0 37.9171    
cufflinks 12.5818 0.0 32.5284    
cufflinks 15.0828 0.0 38.9945   High
cufflinks 14.5437 0.0 37.5932    
cufflinks 9.9414 0.0 25.8786    

0 Strain