Gene : Phvul.007G149600 P. vulgaris v2.1
Defline:  (1 of 2) PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC Genomic Order:  1358
Name:  ? Phvul.007G149600 Secondary Identifier:  ? PAC:37167430
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G149600 0.5kb upstream 0.5kb upstream 5970 true Chr07: 24824908-24830877 Phaseolus vulgaris
Phvul.007G149600 0.5kb upstream 0.5kb upstream 500 false Chr07: 24830378-24830877 Phaseolus vulgaris
Phvul.007G149600 0.5kb downstream 0.5kb downstream 5970 true Chr07: 24824408-24830377 Phaseolus vulgaris
Phvul.007G149600 0.5kb downstream 0.5kb downstream 500 false Chr07: 24824408-24824907 Phaseolus vulgaris
Phvul.007G149600 1.0kb upstream 1.0kb upstream 6470 true Chr07: 24824908-24831377 Phaseolus vulgaris
Phvul.007G149600 1.0kb upstream 1.0kb upstream 1000 false Chr07: 24830378-24831377 Phaseolus vulgaris
Phvul.007G149600 1.0kb downstream 1.0kb downstream 6470 true Chr07: 24823908-24830377 Phaseolus vulgaris
Phvul.007G149600 1.0kb downstream 1.0kb downstream 1000 false Chr07: 24823908-24824907 Phaseolus vulgaris
Phvul.007G149600 2.0kb upstream 2.0kb upstream 7470 true Chr07: 24824908-24832377 Phaseolus vulgaris
Phvul.007G149600 2.0kb upstream 2.0kb upstream 2000 false Chr07: 24830378-24832377 Phaseolus vulgaris
Phvul.007G149600 2.0kb downstream 2.0kb downstream 7470 true Chr07: 24822908-24830377 Phaseolus vulgaris
Phvul.007G149600 2.0kb downstream 2.0kb downstream 2000 false Chr07: 24822908-24824907 Phaseolus vulgaris
Phvul.007G149600 5.0kb upstream 5.0kb upstream 10470 true Chr07: 24824908-24835377 Phaseolus vulgaris
Phvul.007G149600 5.0kb upstream 5.0kb upstream 5000 false Chr07: 24830378-24835377 Phaseolus vulgaris
Phvul.007G149600 5.0kb downstream 5.0kb downstream 10470 true Chr07: 24819908-24830377 Phaseolus vulgaris
Phvul.007G149600 5.0kb downstream 5.0kb downstream 5000 false Chr07: 24819908-24824907 Phaseolus vulgaris
Phvul.007G149600 10.0kb upstream 10.0kb upstream 15470 true Chr07: 24824908-24840377 Phaseolus vulgaris
Phvul.007G149600 10.0kb upstream 10.0kb upstream 10000 false Chr07: 24830378-24840377 Phaseolus vulgaris
Phvul.007G149600 10.0kb downstream 10.0kb downstream 15470 true Chr07: 24814908-24830377 Phaseolus vulgaris
Phvul.007G149600 10.0kb downstream 10.0kb downstream 10000 false Chr07: 24814908-24824907 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311038 5265 Fabidae View MSA
124065306 5270 Rosid View MSA
123751307 5271 Pentapetalae View MSA
122790419 5272 Eudicot View MSA
122046988 5273 Angiosperm View MSA
121346903 5274 Embryophyte View MSA
123428711 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.80308 0.0 33.4447    
cufflinks 11.5008 0.0 38.1957    
cufflinks 97.6845 0.0 394.837 High High
cufflinks 4.75705 0.0 18.8578    
cufflinks 6.48215 0.0 24.275    
cufflinks 45.9927 0.0 156.868 High High
cufflinks 3.20156 0.0 11.7878    
cufflinks 3.93157 0.0 16.0962    
cufflinks 2.42185 0.0 7.70917   Low
cufflinks 9.15635 0.0 31.4978    
cufflinks 5.63037 0.0 21.556    

0 Strain