Gene : Phvul.005G158100 P. vulgaris v2.1
Defline:  (1 of 1) PTHR24012:SF318 - RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN Genomic Order:  1476
Name:  ? Phvul.005G158100 Secondary Identifier:  ? PAC:37153600
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G158100 0.5kb upstream 0.5kb upstream 3995 true Chr05: 38668955-38672949 Phaseolus vulgaris
Phvul.005G158100 0.5kb upstream 0.5kb upstream 500 false Chr05: 38672450-38672949 Phaseolus vulgaris
Phvul.005G158100 0.5kb downstream 0.5kb downstream 3995 true Chr05: 38668455-38672449 Phaseolus vulgaris
Phvul.005G158100 0.5kb downstream 0.5kb downstream 500 false Chr05: 38668455-38668954 Phaseolus vulgaris
Phvul.005G158100 1.0kb upstream 1.0kb upstream 4495 true Chr05: 38668955-38673449 Phaseolus vulgaris
Phvul.005G158100 1.0kb upstream 1.0kb upstream 1000 false Chr05: 38672450-38673449 Phaseolus vulgaris
Phvul.005G158100 1.0kb downstream 1.0kb downstream 4495 true Chr05: 38667955-38672449 Phaseolus vulgaris
Phvul.005G158100 1.0kb downstream 1.0kb downstream 1000 false Chr05: 38667955-38668954 Phaseolus vulgaris
Phvul.005G158100 2.0kb upstream 2.0kb upstream 5495 true Chr05: 38668955-38674449 Phaseolus vulgaris
Phvul.005G158100 2.0kb upstream 2.0kb upstream 2000 false Chr05: 38672450-38674449 Phaseolus vulgaris
Phvul.005G158100 2.0kb downstream 2.0kb downstream 5495 true Chr05: 38666955-38672449 Phaseolus vulgaris
Phvul.005G158100 2.0kb downstream 2.0kb downstream 2000 false Chr05: 38666955-38668954 Phaseolus vulgaris
Phvul.005G158100 5.0kb upstream 5.0kb upstream 8495 true Chr05: 38668955-38677449 Phaseolus vulgaris
Phvul.005G158100 5.0kb upstream 5.0kb upstream 5000 false Chr05: 38672450-38677449 Phaseolus vulgaris
Phvul.005G158100 5.0kb downstream 5.0kb downstream 8495 true Chr05: 38663955-38672449 Phaseolus vulgaris
Phvul.005G158100 5.0kb downstream 5.0kb downstream 5000 false Chr05: 38663955-38668954 Phaseolus vulgaris
Phvul.005G158100 10.0kb upstream 10.0kb upstream 13495 true Chr05: 38668955-38682449 Phaseolus vulgaris
Phvul.005G158100 10.0kb upstream 10.0kb upstream 10000 false Chr05: 38672450-38682449 Phaseolus vulgaris
Phvul.005G158100 10.0kb downstream 10.0kb downstream 13495 true Chr05: 38658955-38672449 Phaseolus vulgaris
Phvul.005G158100 10.0kb downstream 10.0kb downstream 10000 false Chr05: 38658955-38668954 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303442 5265 Fabidae View MSA
124064192 5270 Rosid View MSA
123749875 5271 Pentapetalae View MSA
122795873 5272 Eudicot View MSA
122049849 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121351304 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.6703 0.0 35.77    
cufflinks 10.5164 0.0 35.5773    
cufflinks 9.52143 0.0 29.0427    
cufflinks 10.6707 0.0 32.8618    
cufflinks 10.073 0.0 34.706    
cufflinks 8.8932 0.0 27.6213   Low
cufflinks 14.17 0.0 41.5407   High
cufflinks 13.628 0.0 44.1221   High
cufflinks 9.62916 0.0 29.4263    
cufflinks 13.0922 0.0 43.044   High
cufflinks 12.2884 0.0 40.8607    

0 Strain