Gene : Phvul.009G115300 P. vulgaris v2.1
Defline:  (1 of 2) PTHR10625//PTHR10625:SF127 - HISTONE DEACETYLASE // SUBFAMILY NOT NAMED Genomic Order:  1187
Name:  ? Phvul.009G115300 Secondary Identifier:  ? PAC:37150679
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G115300 0.5kb upstream 0.5kb upstream 11897 true Chr09: 17788377-17800273 Phaseolus vulgaris
Phvul.009G115300 0.5kb upstream 0.5kb upstream 500 false Chr09: 17788377-17788876 Phaseolus vulgaris
Phvul.009G115300 0.5kb downstream 0.5kb downstream 11897 true Chr09: 17788877-17800773 Phaseolus vulgaris
Phvul.009G115300 0.5kb downstream 0.5kb downstream 500 false Chr09: 17800274-17800773 Phaseolus vulgaris
Phvul.009G115300 1.0kb upstream 1.0kb upstream 12397 true Chr09: 17787877-17800273 Phaseolus vulgaris
Phvul.009G115300 1.0kb upstream 1.0kb upstream 1000 false Chr09: 17787877-17788876 Phaseolus vulgaris
Phvul.009G115300 1.0kb downstream 1.0kb downstream 12397 true Chr09: 17788877-17801273 Phaseolus vulgaris
Phvul.009G115300 1.0kb downstream 1.0kb downstream 1000 false Chr09: 17800274-17801273 Phaseolus vulgaris
Phvul.009G115300 2.0kb upstream 2.0kb upstream 13397 true Chr09: 17786877-17800273 Phaseolus vulgaris
Phvul.009G115300 2.0kb upstream 2.0kb upstream 2000 false Chr09: 17786877-17788876 Phaseolus vulgaris
Phvul.009G115300 2.0kb downstream 2.0kb downstream 13397 true Chr09: 17788877-17802273 Phaseolus vulgaris
Phvul.009G115300 2.0kb downstream 2.0kb downstream 2000 false Chr09: 17800274-17802273 Phaseolus vulgaris
Phvul.009G115300 5.0kb upstream 5.0kb upstream 16397 true Chr09: 17783877-17800273 Phaseolus vulgaris
Phvul.009G115300 5.0kb upstream 5.0kb upstream 5000 false Chr09: 17783877-17788876 Phaseolus vulgaris
Phvul.009G115300 5.0kb downstream 5.0kb downstream 16397 true Chr09: 17788877-17805273 Phaseolus vulgaris
Phvul.009G115300 5.0kb downstream 5.0kb downstream 5000 false Chr09: 17800274-17805273 Phaseolus vulgaris
Phvul.009G115300 10.0kb upstream 10.0kb upstream 21397 true Chr09: 17778877-17800273 Phaseolus vulgaris
Phvul.009G115300 10.0kb upstream 10.0kb upstream 10000 false Chr09: 17778877-17788876 Phaseolus vulgaris
Phvul.009G115300 10.0kb downstream 10.0kb downstream 21397 true Chr09: 17788877-17810273 Phaseolus vulgaris
Phvul.009G115300 10.0kb downstream 10.0kb downstream 10000 false Chr09: 17800274-17810273 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304084 5265 Fabidae View MSA
124064781 5270 Rosid View MSA
123742951 5271 Pentapetalae View MSA
122788730 5272 Eudicot View MSA
122042529 5273 Angiosperm View MSA
123429001 5275 Viridiplantae View MSA
121349926 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.9962 0.0 95.7692 High High
cufflinks 23.781 0.0 66.413    
cufflinks 22.7456 0.0 63.2034    
cufflinks 28.975 0.0 81.1526    
cufflinks 22.1609 0.0 61.8036   Low
cufflinks 23.4469 0.0 65.4539    
cufflinks 29.3187 0.0 81.1791 High  
cufflinks 25.2159 0.0 70.5945    
cufflinks 27.7962 0.0 77.9706    
cufflinks 21.1476 0.0 58.9686   Low
cufflinks 27.2801 0.0 76.0343    

0 Strain