Gene : Phvul.009G106600 P. vulgaris v2.1
Defline:  (1 of 2) K11090 - lupus La protein (LA, SSB) Genomic Order:  1101
Name:  ? Phvul.009G106600 Secondary Identifier:  ? PAC:37150348
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G106600 0.5kb upstream 0.5kb upstream 3833 true Chr09: 16549989-16553821 Phaseolus vulgaris
Phvul.009G106600 0.5kb upstream 0.5kb upstream 500 false Chr09: 16549989-16550488 Phaseolus vulgaris
Phvul.009G106600 0.5kb downstream 0.5kb downstream 3833 true Chr09: 16550489-16554321 Phaseolus vulgaris
Phvul.009G106600 0.5kb downstream 0.5kb downstream 500 false Chr09: 16553822-16554321 Phaseolus vulgaris
Phvul.009G106600 1.0kb upstream 1.0kb upstream 4333 true Chr09: 16549489-16553821 Phaseolus vulgaris
Phvul.009G106600 1.0kb upstream 1.0kb upstream 1000 false Chr09: 16549489-16550488 Phaseolus vulgaris
Phvul.009G106600 1.0kb downstream 1.0kb downstream 4333 true Chr09: 16550489-16554821 Phaseolus vulgaris
Phvul.009G106600 1.0kb downstream 1.0kb downstream 1000 false Chr09: 16553822-16554821 Phaseolus vulgaris
Phvul.009G106600 2.0kb upstream 2.0kb upstream 5333 true Chr09: 16548489-16553821 Phaseolus vulgaris
Phvul.009G106600 2.0kb upstream 2.0kb upstream 2000 false Chr09: 16548489-16550488 Phaseolus vulgaris
Phvul.009G106600 2.0kb downstream 2.0kb downstream 5333 true Chr09: 16550489-16555821 Phaseolus vulgaris
Phvul.009G106600 2.0kb downstream 2.0kb downstream 2000 false Chr09: 16553822-16555821 Phaseolus vulgaris
Phvul.009G106600 5.0kb upstream 5.0kb upstream 8333 true Chr09: 16545489-16553821 Phaseolus vulgaris
Phvul.009G106600 5.0kb upstream 5.0kb upstream 5000 false Chr09: 16545489-16550488 Phaseolus vulgaris
Phvul.009G106600 5.0kb downstream 5.0kb downstream 8333 true Chr09: 16550489-16558821 Phaseolus vulgaris
Phvul.009G106600 5.0kb downstream 5.0kb downstream 5000 false Chr09: 16553822-16558821 Phaseolus vulgaris
Phvul.009G106600 10.0kb upstream 10.0kb upstream 13333 true Chr09: 16540489-16553821 Phaseolus vulgaris
Phvul.009G106600 10.0kb upstream 10.0kb upstream 10000 false Chr09: 16540489-16550488 Phaseolus vulgaris
Phvul.009G106600 10.0kb downstream 10.0kb downstream 13333 true Chr09: 16550489-16563821 Phaseolus vulgaris
Phvul.009G106600 10.0kb downstream 10.0kb downstream 10000 false Chr09: 16553822-16563821 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041135 5273 Angiosperm View MSA
122309017 5265 Fabidae View MSA
124064026 5270 Rosid View MSA
123746572 5271 Pentapetalae View MSA
122791313 5272 Eudicot View MSA
121349930 5274 Embryophyte View MSA
123427383 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.0889 0.0 34.2018    
cufflinks 21.4935 0.0 55.5614    
cufflinks 17.78 0.0 46.0508    
cufflinks 8.18944 0.0 22.3311   Low
cufflinks 18.4551 0.0 47.8573    
cufflinks 13.1785 0.0 34.4903    
cufflinks 30.1389 0.0 78.3241 High High
cufflinks 28.5269 0.0 74.0848 High  
cufflinks 31.6579 0.0 82.3588 High High
cufflinks 25.1798 0.0 65.1134    
cufflinks 19.5343 0.0 50.5575    

0 Strain