Gene : Phvul.009G175000 P. vulgaris v2.1
Defline:  (1 of 2) PTHR10625:SF109 - HISTONE DEACETYLASE 2 Genomic Order:  1790
Name:  ? Phvul.009G175000 Secondary Identifier:  ? PAC:37152041
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G175000 0.5kb upstream 0.5kb upstream 5552 true Chr09: 25982894-25988445 Phaseolus vulgaris
Phvul.009G175000 0.5kb upstream 0.5kb upstream 500 false Chr09: 25982894-25983393 Phaseolus vulgaris
Phvul.009G175000 0.5kb downstream 0.5kb downstream 5552 true Chr09: 25983394-25988945 Phaseolus vulgaris
Phvul.009G175000 0.5kb downstream 0.5kb downstream 500 false Chr09: 25988446-25988945 Phaseolus vulgaris
Phvul.009G175000 1.0kb upstream 1.0kb upstream 6052 true Chr09: 25982394-25988445 Phaseolus vulgaris
Phvul.009G175000 1.0kb upstream 1.0kb upstream 1000 false Chr09: 25982394-25983393 Phaseolus vulgaris
Phvul.009G175000 1.0kb downstream 1.0kb downstream 6052 true Chr09: 25983394-25989445 Phaseolus vulgaris
Phvul.009G175000 1.0kb downstream 1.0kb downstream 1000 false Chr09: 25988446-25989445 Phaseolus vulgaris
Phvul.009G175000 2.0kb upstream 2.0kb upstream 7052 true Chr09: 25981394-25988445 Phaseolus vulgaris
Phvul.009G175000 2.0kb upstream 2.0kb upstream 2000 false Chr09: 25981394-25983393 Phaseolus vulgaris
Phvul.009G175000 2.0kb downstream 2.0kb downstream 7052 true Chr09: 25983394-25990445 Phaseolus vulgaris
Phvul.009G175000 2.0kb downstream 2.0kb downstream 2000 false Chr09: 25988446-25990445 Phaseolus vulgaris
Phvul.009G175000 5.0kb upstream 5.0kb upstream 10052 true Chr09: 25978394-25988445 Phaseolus vulgaris
Phvul.009G175000 5.0kb upstream 5.0kb upstream 5000 false Chr09: 25978394-25983393 Phaseolus vulgaris
Phvul.009G175000 5.0kb downstream 5.0kb downstream 10052 true Chr09: 25983394-25993445 Phaseolus vulgaris
Phvul.009G175000 5.0kb downstream 5.0kb downstream 5000 false Chr09: 25988446-25993445 Phaseolus vulgaris
Phvul.009G175000 10.0kb upstream 10.0kb upstream 15052 true Chr09: 25973394-25988445 Phaseolus vulgaris
Phvul.009G175000 10.0kb upstream 10.0kb upstream 10000 false Chr09: 25973394-25983393 Phaseolus vulgaris
Phvul.009G175000 10.0kb downstream 10.0kb downstream 15052 true Chr09: 25983394-25998445 Phaseolus vulgaris
Phvul.009G175000 10.0kb downstream 10.0kb downstream 10000 false Chr09: 25988446-25998445 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299156 5265 Fabidae View MSA
124068435 5270 Rosid View MSA
123739181 5271 Pentapetalae View MSA
122793784 5272 Eudicot View MSA
122043471 5273 Angiosperm View MSA
123429001 5275 Viridiplantae View MSA
121349926 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.7741 0.0 63.7282    
cufflinks 23.4316 0.0 74.6819    
cufflinks 19.727 0.0 63.068    
cufflinks 24.6281 0.0 79.3322    
cufflinks 21.5186 0.0 68.6721    
cufflinks 15.3899 0.0 49.8346   Low
cufflinks 16.5429 0.0 53.2978   Low
cufflinks 19.3161 0.0 61.9057    
cufflinks 15.968 0.0 51.4334   Low
cufflinks 26.3328 0.0 84.3382   High
cufflinks 25.6371 0.0 82.0774   High

0 Strain