Gene : Phvul.011G016600 P. vulgaris v2.1
Defline:  (1 of 1) K03163 - DNA topoisomerase I [EC:5.99.1.2] (TOP1) Genomic Order:  168
Name:  ? Phvul.011G016600 Secondary Identifier:  ? PAC:37155914
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G016600 0.5kb upstream 0.5kb upstream 8934 true Chr11: 1304549-1313482 Phaseolus vulgaris
Phvul.011G016600 0.5kb upstream 0.5kb upstream 500 false Chr11: 1304549-1305048 Phaseolus vulgaris
Phvul.011G016600 0.5kb downstream 0.5kb downstream 8934 true Chr11: 1305049-1313982 Phaseolus vulgaris
Phvul.011G016600 0.5kb downstream 0.5kb downstream 500 false Chr11: 1313483-1313982 Phaseolus vulgaris
Phvul.011G016600 1.0kb upstream 1.0kb upstream 9434 true Chr11: 1304049-1313482 Phaseolus vulgaris
Phvul.011G016600 1.0kb upstream 1.0kb upstream 1000 false Chr11: 1304049-1305048 Phaseolus vulgaris
Phvul.011G016600 1.0kb downstream 1.0kb downstream 9434 true Chr11: 1305049-1314482 Phaseolus vulgaris
Phvul.011G016600 1.0kb downstream 1.0kb downstream 1000 false Chr11: 1313483-1314482 Phaseolus vulgaris
Phvul.011G016600 2.0kb upstream 2.0kb upstream 10434 true Chr11: 1303049-1313482 Phaseolus vulgaris
Phvul.011G016600 2.0kb upstream 2.0kb upstream 2000 false Chr11: 1303049-1305048 Phaseolus vulgaris
Phvul.011G016600 2.0kb downstream 2.0kb downstream 10434 true Chr11: 1305049-1315482 Phaseolus vulgaris
Phvul.011G016600 2.0kb downstream 2.0kb downstream 2000 false Chr11: 1313483-1315482 Phaseolus vulgaris
Phvul.011G016600 5.0kb upstream 5.0kb upstream 13434 true Chr11: 1300049-1313482 Phaseolus vulgaris
Phvul.011G016600 5.0kb upstream 5.0kb upstream 5000 false Chr11: 1300049-1305048 Phaseolus vulgaris
Phvul.011G016600 5.0kb downstream 5.0kb downstream 13434 true Chr11: 1305049-1318482 Phaseolus vulgaris
Phvul.011G016600 5.0kb downstream 5.0kb downstream 5000 false Chr11: 1313483-1318482 Phaseolus vulgaris
Phvul.011G016600 10.0kb upstream 10.0kb upstream 18434 true Chr11: 1295049-1313482 Phaseolus vulgaris
Phvul.011G016600 10.0kb upstream 10.0kb upstream 10000 false Chr11: 1295049-1305048 Phaseolus vulgaris
Phvul.011G016600 10.0kb downstream 10.0kb downstream 18434 true Chr11: 1305049-1323482 Phaseolus vulgaris
Phvul.011G016600 10.0kb downstream 10.0kb downstream 10000 false Chr11: 1313483-1323482 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308172 5265 Fabidae View MSA
124069398 5270 Rosid View MSA
123742163 5271 Pentapetalae View MSA
122793496 5272 Eudicot View MSA
122043821 5273 Angiosperm View MSA
121346629 5274 Embryophyte View MSA
123428492 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.9783 0.0 38.0566    
cufflinks 16.2682 0.0 51.4892    
cufflinks 26.9154 0.0 89.2397   High
cufflinks 8.07594 0.0 24.1993   Low
cufflinks 13.5701 0.0 44.533    
cufflinks 26.7833 0.0 88.1987   High
cufflinks 23.3136 0.0 75.7922    
cufflinks 24.5316 0.0 80.831    
cufflinks 24.2391 0.0 71.5131    
cufflinks 18.7346 0.0 59.5883    
cufflinks 13.3981 0.0 42.4988    

0 Strain