Gene : Phvul.L003243 P. vulgaris v2.1
Defline:  (1 of 252) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Genomic Order:  17
Name:  ? Phvul.L003243 Secondary Identifier:  ? PAC:37179009
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.L003243 0.5kb upstream 0.5kb upstream 2385 true scaffold_15: 162777-165161 Phaseolus vulgaris
Phvul.L003243 0.5kb upstream 0.5kb upstream 500 false scaffold_15: 162777-163276 Phaseolus vulgaris
Phvul.L003243 0.5kb downstream 0.5kb downstream 2385 true scaffold_15: 163277-165661 Phaseolus vulgaris
Phvul.L003243 0.5kb downstream 0.5kb downstream 500 false scaffold_15: 165162-165661 Phaseolus vulgaris
Phvul.L003243 1.0kb upstream 1.0kb upstream 2885 true scaffold_15: 162277-165161 Phaseolus vulgaris
Phvul.L003243 1.0kb upstream 1.0kb upstream 1000 false scaffold_15: 162277-163276 Phaseolus vulgaris
Phvul.L003243 1.0kb downstream 1.0kb downstream 2885 true scaffold_15: 163277-166161 Phaseolus vulgaris
Phvul.L003243 1.0kb downstream 1.0kb downstream 1000 false scaffold_15: 165162-166161 Phaseolus vulgaris
Phvul.L003243 2.0kb upstream 2.0kb upstream 3885 true scaffold_15: 161277-165161 Phaseolus vulgaris
Phvul.L003243 2.0kb upstream 2.0kb upstream 2000 false scaffold_15: 161277-163276 Phaseolus vulgaris
Phvul.L003243 2.0kb downstream 2.0kb downstream 3885 true scaffold_15: 163277-167161 Phaseolus vulgaris
Phvul.L003243 2.0kb downstream 2.0kb downstream 2000 false scaffold_15: 165162-167161 Phaseolus vulgaris
Phvul.L003243 5.0kb upstream 5.0kb upstream 6885 true scaffold_15: 158277-165161 Phaseolus vulgaris
Phvul.L003243 5.0kb upstream 5.0kb upstream 5000 false scaffold_15: 158277-163276 Phaseolus vulgaris
Phvul.L003243 5.0kb downstream 5.0kb downstream 6885 true scaffold_15: 163277-170161 Phaseolus vulgaris
Phvul.L003243 5.0kb downstream 5.0kb downstream 5000 false scaffold_15: 165162-170161 Phaseolus vulgaris
Phvul.L003243 10.0kb upstream 10.0kb upstream 11885 true scaffold_15: 153277-165161 Phaseolus vulgaris
Phvul.L003243 10.0kb upstream 10.0kb upstream 10000 false scaffold_15: 153277-163276 Phaseolus vulgaris
Phvul.L003243 10.0kb downstream 10.0kb downstream 11885 true scaffold_15: 163277-175161 Phaseolus vulgaris
Phvul.L003243 10.0kb downstream 10.0kb downstream 10000 false scaffold_15: 165162-175161 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301038 5265 Fabidae View MSA
124061661 5270 Rosid View MSA
123747843 5271 Pentapetalae View MSA
122790614 5272 Eudicot View MSA
122044868 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349952 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.7074 0.0 44.0635   High
cufflinks 5.7198 0.0 19.077    
cufflinks 9.87114 0.0 31.0336   High
cufflinks 3.30172 0.0 11.6984   Low
cufflinks 3.57668 0.0 12.6939   Low
cufflinks 5.37447 0.0 18.0593    
cufflinks 6.85008 0.0 22.3538    
cufflinks 9.07131 0.0 28.6719    
cufflinks 7.00981 0.0 22.8185    
cufflinks 5.2541 0.0 17.7435    
cufflinks 4.99993 0.0 16.9883    

0 Strain