Gene : Phvul.011G114400 P. vulgaris v2.1
Defline:  (1 of 2) PTHR12313//PTHR12313:SF5 - RNF5 // SUBFAMILY NOT NAMED Genomic Order:  1150
Name:  ? Phvul.011G114400 Secondary Identifier:  ? PAC:37154747
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7511 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G114400 0.5kb upstream 0.5kb upstream 3864 true Chr11: 15667104-15670967 Phaseolus vulgaris
Phvul.011G114400 0.5kb upstream 0.5kb upstream 500 false Chr11: 15667104-15667603 Phaseolus vulgaris
Phvul.011G114400 0.5kb downstream 0.5kb downstream 3864 true Chr11: 15667604-15671467 Phaseolus vulgaris
Phvul.011G114400 0.5kb downstream 0.5kb downstream 500 false Chr11: 15670968-15671467 Phaseolus vulgaris
Phvul.011G114400 1.0kb upstream 1.0kb upstream 4364 true Chr11: 15666604-15670967 Phaseolus vulgaris
Phvul.011G114400 1.0kb upstream 1.0kb upstream 1000 false Chr11: 15666604-15667603 Phaseolus vulgaris
Phvul.011G114400 1.0kb downstream 1.0kb downstream 4364 true Chr11: 15667604-15671967 Phaseolus vulgaris
Phvul.011G114400 1.0kb downstream 1.0kb downstream 1000 false Chr11: 15670968-15671967 Phaseolus vulgaris
Phvul.011G114400 2.0kb upstream 2.0kb upstream 5364 true Chr11: 15665604-15670967 Phaseolus vulgaris
Phvul.011G114400 2.0kb upstream 2.0kb upstream 2000 false Chr11: 15665604-15667603 Phaseolus vulgaris
Phvul.011G114400 2.0kb downstream 2.0kb downstream 5364 true Chr11: 15667604-15672967 Phaseolus vulgaris
Phvul.011G114400 2.0kb downstream 2.0kb downstream 2000 false Chr11: 15670968-15672967 Phaseolus vulgaris
Phvul.011G114400 5.0kb upstream 5.0kb upstream 8364 true Chr11: 15662604-15670967 Phaseolus vulgaris
Phvul.011G114400 5.0kb upstream 5.0kb upstream 5000 false Chr11: 15662604-15667603 Phaseolus vulgaris
Phvul.011G114400 5.0kb downstream 5.0kb downstream 8364 true Chr11: 15667604-15675967 Phaseolus vulgaris
Phvul.011G114400 5.0kb downstream 5.0kb downstream 5000 false Chr11: 15670968-15675967 Phaseolus vulgaris
Phvul.011G114400 10.0kb upstream 10.0kb upstream 13364 true Chr11: 15657604-15670967 Phaseolus vulgaris
Phvul.011G114400 10.0kb upstream 10.0kb upstream 10000 false Chr11: 15657604-15667603 Phaseolus vulgaris
Phvul.011G114400 10.0kb downstream 10.0kb downstream 13364 true Chr11: 15667604-15680967 Phaseolus vulgaris
Phvul.011G114400 10.0kb downstream 10.0kb downstream 10000 false Chr11: 15670968-15680967 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308246 5265 Fabidae View MSA
124070721 5270 Rosid View MSA
123750753 5271 Pentapetalae View MSA
122796389 5272 Eudicot View MSA
122051949 5273 Angiosperm View MSA
121312825 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 162.308 0.0 620.169 High High
cufflinks 33.5316 0.0 107.35 High  
cufflinks 30.064 0.0 104.021    
cufflinks 17.7153 0.0 62.9603    
cufflinks 32.1198 0.0 112.225    
cufflinks 7.12266 0.0 25.3993    
cufflinks 6.83393 0.0 26.738    
cufflinks 2.74254 0.0 12.948   Low
cufflinks 22.6628 0.0 76.8269    
cufflinks 69.6392 0.0 236.66 High High
cufflinks 7.99595 0.0 29.9463    

0 Strain