Gene : Phvul.011G099300 P. vulgaris v2.1
Defline:  (1 of 2) PTHR22849:SF0 - WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1 Genomic Order:  996
Name:  ? Phvul.011G099300 Secondary Identifier:  ? PAC:37156438
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7511 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G099300 0.5kb upstream 0.5kb upstream 1733 true Chr11: 10474798-10476530 Phaseolus vulgaris
Phvul.011G099300 0.5kb upstream 0.5kb upstream 500 false Chr11: 10474798-10475297 Phaseolus vulgaris
Phvul.011G099300 0.5kb downstream 0.5kb downstream 1733 true Chr11: 10475298-10477030 Phaseolus vulgaris
Phvul.011G099300 0.5kb downstream 0.5kb downstream 500 false Chr11: 10476531-10477030 Phaseolus vulgaris
Phvul.011G099300 1.0kb upstream 1.0kb upstream 2233 true Chr11: 10474298-10476530 Phaseolus vulgaris
Phvul.011G099300 1.0kb upstream 1.0kb upstream 1000 false Chr11: 10474298-10475297 Phaseolus vulgaris
Phvul.011G099300 1.0kb downstream 1.0kb downstream 2233 true Chr11: 10475298-10477530 Phaseolus vulgaris
Phvul.011G099300 1.0kb downstream 1.0kb downstream 1000 false Chr11: 10476531-10477530 Phaseolus vulgaris
Phvul.011G099300 2.0kb upstream 2.0kb upstream 3233 true Chr11: 10473298-10476530 Phaseolus vulgaris
Phvul.011G099300 2.0kb upstream 2.0kb upstream 2000 false Chr11: 10473298-10475297 Phaseolus vulgaris
Phvul.011G099300 2.0kb downstream 2.0kb downstream 3233 true Chr11: 10475298-10478530 Phaseolus vulgaris
Phvul.011G099300 2.0kb downstream 2.0kb downstream 2000 false Chr11: 10476531-10478530 Phaseolus vulgaris
Phvul.011G099300 5.0kb upstream 5.0kb upstream 6233 true Chr11: 10470298-10476530 Phaseolus vulgaris
Phvul.011G099300 5.0kb upstream 5.0kb upstream 5000 false Chr11: 10470298-10475297 Phaseolus vulgaris
Phvul.011G099300 5.0kb downstream 5.0kb downstream 6233 true Chr11: 10475298-10481530 Phaseolus vulgaris
Phvul.011G099300 5.0kb downstream 5.0kb downstream 5000 false Chr11: 10476531-10481530 Phaseolus vulgaris
Phvul.011G099300 10.0kb upstream 10.0kb upstream 11233 true Chr11: 10465298-10476530 Phaseolus vulgaris
Phvul.011G099300 10.0kb upstream 10.0kb upstream 10000 false Chr11: 10465298-10475297 Phaseolus vulgaris
Phvul.011G099300 10.0kb downstream 10.0kb downstream 11233 true Chr11: 10475298-10486530 Phaseolus vulgaris
Phvul.011G099300 10.0kb downstream 10.0kb downstream 10000 false Chr11: 10476531-10486530 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310390 5265 Fabidae View MSA
124070283 5270 Rosid View MSA
123752134 5271 Pentapetalae View MSA
122795209 5272 Eudicot View MSA
122048631 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.244433 0.0 0.990418 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.585625 0.0 2.22392   High
cufflinks 0.0530412 0.0 0.249058 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.273098 0.0 1.09721 Low  
cufflinks 0.0250722 0.0 0.126946 Low Low
cufflinks 0.110404 0.0 0.479478 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain