Gene : Thecc1EG001701 T. cacao v1.1

Defline:  (1 of 1) PTHR16166//PTHR16166:SF87 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 // SUBFAMILY NOT NAMED Genomic Order:  1457
Name:  ? Thecc1EG001701 Secondary Identifier:  ? PAC:27431768

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG001701 0.5kb upstream 0.5kb upstream 44764 true scaffold_1: 8817953-8862716 Theobroma cacao
Thecc1EG001701 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 8817953-8818452 Theobroma cacao
Thecc1EG001701 0.5kb downstream 0.5kb downstream 44764 true scaffold_1: 8818453-8863216 Theobroma cacao
Thecc1EG001701 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 8862717-8863216 Theobroma cacao
Thecc1EG001701 1.0kb upstream 1.0kb upstream 45264 true scaffold_1: 8817453-8862716 Theobroma cacao
Thecc1EG001701 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 8817453-8818452 Theobroma cacao
Thecc1EG001701 1.0kb downstream 1.0kb downstream 45264 true scaffold_1: 8818453-8863716 Theobroma cacao
Thecc1EG001701 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 8862717-8863716 Theobroma cacao
Thecc1EG001701 2.0kb upstream 2.0kb upstream 46264 true scaffold_1: 8816453-8862716 Theobroma cacao
Thecc1EG001701 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 8816453-8818452 Theobroma cacao
Thecc1EG001701 2.0kb downstream 2.0kb downstream 46264 true scaffold_1: 8818453-8864716 Theobroma cacao
Thecc1EG001701 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 8862717-8864716 Theobroma cacao
Thecc1EG001701 5.0kb upstream 5.0kb upstream 49264 true scaffold_1: 8813453-8862716 Theobroma cacao
Thecc1EG001701 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 8813453-8818452 Theobroma cacao
Thecc1EG001701 5.0kb downstream 5.0kb downstream 49264 true scaffold_1: 8818453-8867716 Theobroma cacao
Thecc1EG001701 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 8862717-8867716 Theobroma cacao
Thecc1EG001701 10.0kb upstream 10.0kb upstream 54264 true scaffold_1: 8808453-8862716 Theobroma cacao
Thecc1EG001701 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 8808453-8818452 Theobroma cacao
Thecc1EG001701 10.0kb downstream 10.0kb downstream 54264 true scaffold_1: 8818453-8872716 Theobroma cacao
Thecc1EG001701 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 8862717-8872716 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123827993 5264 Brassicales-Malvales View MSA
124339674 5266 SBM View MSA
124239824 5268 Malvidae View MSA
124066672 5270 Rosid View MSA
123741349 5271 Pentapetalae View MSA
122793853 5272 Eudicot View MSA
122042276 5273 Angiosperm View MSA
121346115 5274 Embryophyte View MSA
123424266 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain