Gene : Thecc1EG005874 T. cacao v1.1
Defline:  (1 of 1) PTHR10543//PTHR10543:SF37 - BETA-CAROTENE DIOXYGENASE // CAROTENOID 9,10(9',10')-CLEAVAGE DIOXYGENASE 1 Genomic Order:  4049
Name:  ? Thecc1EG005874 Secondary Identifier:  ? PAC:27433665
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG005874 0.5kb upstream 0.5kb upstream 7276 true scaffold_1: 38620777-38628052 Theobroma cacao
Thecc1EG005874 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 38620777-38621276 Theobroma cacao
Thecc1EG005874 0.5kb downstream 0.5kb downstream 7276 true scaffold_1: 38621277-38628552 Theobroma cacao
Thecc1EG005874 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 38628053-38628552 Theobroma cacao
Thecc1EG005874 1.0kb upstream 1.0kb upstream 7776 true scaffold_1: 38620277-38628052 Theobroma cacao
Thecc1EG005874 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 38620277-38621276 Theobroma cacao
Thecc1EG005874 1.0kb downstream 1.0kb downstream 7776 true scaffold_1: 38621277-38629052 Theobroma cacao
Thecc1EG005874 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 38628053-38629052 Theobroma cacao
Thecc1EG005874 2.0kb upstream 2.0kb upstream 8776 true scaffold_1: 38619277-38628052 Theobroma cacao
Thecc1EG005874 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 38619277-38621276 Theobroma cacao
Thecc1EG005874 2.0kb downstream 2.0kb downstream 8776 true scaffold_1: 38621277-38630052 Theobroma cacao
Thecc1EG005874 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 38628053-38630052 Theobroma cacao
Thecc1EG005874 5.0kb upstream 5.0kb upstream 11776 true scaffold_1: 38616277-38628052 Theobroma cacao
Thecc1EG005874 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 38616277-38621276 Theobroma cacao
Thecc1EG005874 5.0kb downstream 5.0kb downstream 11776 true scaffold_1: 38621277-38633052 Theobroma cacao
Thecc1EG005874 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 38628053-38633052 Theobroma cacao
Thecc1EG005874 10.0kb upstream 10.0kb upstream 16776 true scaffold_1: 38611277-38628052 Theobroma cacao
Thecc1EG005874 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 38611277-38621276 Theobroma cacao
Thecc1EG005874 10.0kb downstream 10.0kb downstream 16776 true scaffold_1: 38621277-38638052 Theobroma cacao
Thecc1EG005874 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 38628053-38638052 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123828703 5264 Brassicales-Malvales View MSA
124341776 5266 SBM View MSA
124236876 5268 Malvidae View MSA
124065010 5270 Rosid View MSA
123749061 5271 Pentapetalae View MSA
122787138 5272 Eudicot View MSA
122045403 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain