Gene : Thecc1EG046691 T. cacao v1.1
Defline:  (1 of 1) K11087 - small nuclear ribonucleoprotein D1 (SNRPD1, SMD1) Genomic Order:  2804
Name:  ? Thecc1EG046691 Secondary Identifier:  ? PAC:27432451
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG046691 0.5kb upstream 0.5kb upstream 2917 true scaffold_1: 31522882-31525798 Theobroma cacao
Thecc1EG046691 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 31525299-31525798 Theobroma cacao
Thecc1EG046691 0.5kb downstream 0.5kb downstream 2917 true scaffold_1: 31522382-31525298 Theobroma cacao
Thecc1EG046691 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 31522382-31522881 Theobroma cacao
Thecc1EG046691 1.0kb upstream 1.0kb upstream 3417 true scaffold_1: 31522882-31526298 Theobroma cacao
Thecc1EG046691 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 31525299-31526298 Theobroma cacao
Thecc1EG046691 1.0kb downstream 1.0kb downstream 3417 true scaffold_1: 31521882-31525298 Theobroma cacao
Thecc1EG046691 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 31521882-31522881 Theobroma cacao
Thecc1EG046691 2.0kb upstream 2.0kb upstream 4417 true scaffold_1: 31522882-31527298 Theobroma cacao
Thecc1EG046691 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 31525299-31527298 Theobroma cacao
Thecc1EG046691 2.0kb downstream 2.0kb downstream 4417 true scaffold_1: 31520882-31525298 Theobroma cacao
Thecc1EG046691 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 31520882-31522881 Theobroma cacao
Thecc1EG046691 5.0kb upstream 5.0kb upstream 7417 true scaffold_1: 31522882-31530298 Theobroma cacao
Thecc1EG046691 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 31525299-31530298 Theobroma cacao
Thecc1EG046691 5.0kb downstream 5.0kb downstream 7417 true scaffold_1: 31517882-31525298 Theobroma cacao
Thecc1EG046691 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 31517882-31522881 Theobroma cacao
Thecc1EG046691 10.0kb upstream 10.0kb upstream 12417 true scaffold_1: 31522882-31535298 Theobroma cacao
Thecc1EG046691 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 31525299-31535298 Theobroma cacao
Thecc1EG046691 10.0kb downstream 10.0kb downstream 12417 true scaffold_1: 31512882-31525298 Theobroma cacao
Thecc1EG046691 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 31512882-31522881 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123825550 5264 Brassicales-Malvales View MSA
124320648 5266 SBM View MSA
124168718 5268 Malvidae View MSA
123892025 5270 Rosid View MSA
123750770 5271 Pentapetalae View MSA
122792948 5272 Eudicot View MSA
122045867 5273 Angiosperm View MSA
121351003 5274 Embryophyte View MSA
123426098 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain