Protein Family : LSM domain containing protein, expressed 123426098

Method ID:  5275 Method Name:  Viridiplantae
Sequence Alignment:  View MSA Member Count:  118

118 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
29647.t000116 (1 of 1) K11087 - small nuclear ribonucleoprotein D1 (SNRPD1, SMD1) R. communis v0.1 2016   29647: 721960-723975
Cucsa.341710 (1 of 4) PTHR23338 - SMALL NUCLEAR RIBONUCLEOPROTEIN SM C. sativus v1.0 3654   scaffold03356: 4110771-4114424
orange1.1g033530m.g (1 of 2) KOG3428 - Small nuclear ribonucleoprotein SMD1 and related snRNPs C. sinensis v1.1 2689   scaffold00022: 1283204-1285892
AT4G02840 (1 of 2) K11087 - small nuclear ribonucleoprotein D1 (SNRPD1, SMD1) A. thaliana TAIR10 1860   Chr4: 1264627-1266486
AT3G07590 (1 of 2) K11087 - small nuclear ribonucleoprotein D1 (SNRPD1, SMD1) A. thaliana TAIR10 1525   Chr3: 2423070-2424594
Thhalv10029079m.g (1 of 2) KOG3428 - Small nuclear ribonucleoprotein SMD1 and related snRNPs E. salsugineum v1.0 1849   scaffold_3: 1411423-1413271
Thhalv10005157m.g (1 of 2) KOG3428 - Small nuclear ribonucleoprotein SMD1 and related snRNPs E. salsugineum v1.0 955   scaffold_6: 5060362-5061316
Ciclev10022934m.g (1 of 2) KOG3428 - Small nuclear ribonucleoprotein SMD1 and related snRNPs C. clementina v1.0 2781   scaffold_3: 44708642-44711422
Lus10028022.g (1 of 4) KOG3428 - Small nuclear ribonucleoprotein SMD1 and related snRNPs L. usitatissimum v1.0 2361   scaffold132: 373746-376106
Gorai.004G215800 (1 of 6) KOG3428 - Small nuclear ribonucleoprotein SMD1 and related snRNPs G. raimondii v2.1 2052   Chr04: 54861340-54863391
Gorai.008G005000 (1 of 6) KOG3428 - Small nuclear ribonucleoprotein SMD1 and related snRNPs G. raimondii v2.1 2344   Chr08: 693081-695424
Gorai.007G135700 (1 of 6) KOG3428 - Small nuclear ribonucleoprotein SMD1 and related snRNPs G. raimondii v2.1 2679   Chr07: 11077332-11080010
Gorai.007G163800 (1 of 6) KOG3428 - Small nuclear ribonucleoprotein SMD1 and related snRNPs G. raimondii v2.1 2750   Chr07: 14327311-14330060
e_gw1.7.497.1 (1 of 3) PTHR23338 - SMALL NUCLEAR RIBONUCLEOPROTEIN SM C. subellipsoidea C-169 v2.0 1103   scaffold_7: 366603-367705
MicpuC2.EuGene.0000040228 (1 of 1) KOG3428 - Small nuclear ribonucleoprotein SMD1 and related snRNPs M. pusilla CCMP1545 v3.0 934   scaffold_4: 437259-438192
EuGene.0400010570 (1 of 3) PTHR23338 - SMALL NUCLEAR RIBONUCLEOPROTEIN SM M. sp RCC299 v3.0 821   Chr_04: 1167838-1168658
fgenesh1_pm.C_Chr_4000044 (1 of 2) KOG3428 - Small nuclear ribonucleoprotein SMD1 and related snRNPs O. lucimarinus v2.0 564   Chr_4: 408736-409299
Thecc1EG046691 (1 of 1) K11087 - small nuclear ribonucleoprotein D1 (SNRPD1, SMD1) T. cacao v1.1 2417   scaffold_1: 31522882-31525298
Migut.D00283 (1 of 3) KOG3428 - Small nuclear ribonucleoprotein SMD1 and related snRNPs M. guttatus v2.0 3283   scaffold_4: 1280629-1283911
Migut.M01594 (1 of 3) KOG3428 - Small nuclear ribonucleoprotein SMD1 and related snRNPs M. guttatus v2.0 1694   scaffold_13: 19229088-19230781
Migut.O00722 (1 of 3) KOG3428 - Small nuclear ribonucleoprotein SMD1 and related snRNPs M. guttatus v2.0 2563   scaffold_1487: 4174-6736
Araha.1135s0001 (1 of 3) KOG3428 - Small nuclear ribonucleoprotein SMD1 and related snRNPs A. halleri v1.1 1892   Scaffold1135: 409-2300
Araha.4706s0018 (1 of 3) KOG3428 - Small nuclear ribonucleoprotein SMD1 and related snRNPs A. halleri v1.1 1062   Scaffold4706: 60965-62026
Araha.5052s0016 (1 of 3) KOG3428 - Small nuclear ribonucleoprotein SMD1 and related snRNPs A. halleri v1.1 1589   Scaffold5052: 65790-67378
Cagra.0133s0105 (1 of 2) KOG3428 - Small nuclear ribonucleoprotein SMD1 and related snRNPs C. grandiflora v1.1 1151   Scaffold133: 385456-386606
Cagra.8967s0006 (1 of 2) KOG3428 - Small nuclear ribonucleoprotein SMD1 and related snRNPs C. grandiflora v1.1 1734   Scaffold8967: 20700-22433
Glyma.18G285500 (1 of 10) PTHR23338 - SMALL NUCLEAR RIBONUCLEOPROTEIN SM G. max Wm82.a2.v1 2310   Chr18: 56580082-56582391
Glyma.02G096000 (1 of 10) PTHR23338 - SMALL NUCLEAR RIBONUCLEOPROTEIN SM G. max Wm82.a2.v1 2315   Chr02: 8653741-8656055
Glyma.03G152100 (1 of 10) PTHR23338 - SMALL NUCLEAR RIBONUCLEOPROTEIN SM G. max Wm82.a2.v1 3116   Chr03: 36714161-36717276
Glyma.19G154600 (1 of 10) PTHR23338 - SMALL NUCLEAR RIBONUCLEOPROTEIN SM G. max Wm82.a2.v1 4153   Chr19: 41497913-41502065

118 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
29647.m002108 R. communis v0.1 123426098 LSM domain containing protein, expressed 1 5275 Viridiplantae
Cucsa.341710.1 C. sativus v1.0 123426098 LSM domain containing protein, expressed 1 5275 Viridiplantae
orange1.1g033530m C. sinensis v1.1 123426098 LSM domain containing protein, expressed 1 5275 Viridiplantae
AT4G02840.2 A. thaliana TAIR10 123426098 LSM domain containing protein, expressed 2 5275 Viridiplantae
AT3G07590.1 A. thaliana TAIR10 123426098 LSM domain containing protein, expressed 2 5275 Viridiplantae
Thhalv10029079m E. salsugineum v1.0 123426098 LSM domain containing protein, expressed 2 5275 Viridiplantae
Thhalv10005157m E. salsugineum v1.0 123426098 LSM domain containing protein, expressed 2 5275 Viridiplantae
Ciclev10022934m C. clementina v1.0 123426098 LSM domain containing protein, expressed 1 5275 Viridiplantae
Lus10028022 L. usitatissimum v1.0 123426098 LSM domain containing protein, expressed 1 5275 Viridiplantae
Gorai.007G135700.1 G. raimondii v2.1 123426098 LSM domain containing protein, expressed 4 5275 Viridiplantae
Gorai.004G215800.1 G. raimondii v2.1 123426098 LSM domain containing protein, expressed 4 5275 Viridiplantae
Gorai.008G005000.1 G. raimondii v2.1 123426098 LSM domain containing protein, expressed 4 5275 Viridiplantae
Gorai.007G163800.1 G. raimondii v2.1 123426098 LSM domain containing protein, expressed 4 5275 Viridiplantae
15233 C. subellipsoidea C-169 v2.0 123426098 LSM domain containing protein, expressed 1 5275 Viridiplantae
57102 M. pusilla CCMP1545 v3.0 123426098 LSM domain containing protein, expressed 1 5275 Viridiplantae
58041 M. sp RCC299 v3.0 123426098 LSM domain containing protein, expressed 1 5275 Viridiplantae
12445 O. lucimarinus v2.0 123426098 LSM domain containing protein, expressed 1 5275 Viridiplantae
Thecc1EG046691t1 T. cacao v1.1 123426098 LSM domain containing protein, expressed 1 5275 Viridiplantae
Migut.D00283.1.p M. guttatus v2.0 123426098 LSM domain containing protein, expressed 3 5275 Viridiplantae
Migut.O00722.1.p M. guttatus v2.0 123426098 LSM domain containing protein, expressed 3 5275 Viridiplantae
Migut.M01594.1.p M. guttatus v2.0 123426098 LSM domain containing protein, expressed 3 5275 Viridiplantae
Araha.1135s0001.1.p A. halleri v1.1 123426098 LSM domain containing protein, expressed 3 5275 Viridiplantae
Araha.5052s0016.1.p A. halleri v1.1 123426098 LSM domain containing protein, expressed 3 5275 Viridiplantae
Araha.4706s0018.1.p A. halleri v1.1 123426098 LSM domain containing protein, expressed 3 5275 Viridiplantae
Cagra.0133s0105.1.p C. grandiflora v1.1 123426098 LSM domain containing protein, expressed 2 5275 Viridiplantae
Cagra.8967s0006.1.p C. grandiflora v1.1 123426098 LSM domain containing protein, expressed 2 5275 Viridiplantae
Glyma.18G285500.1.p G. max Wm82.a2.v1 123426098 LSM domain containing protein, expressed 4 5275 Viridiplantae
Glyma.19G154600.1.p G. max Wm82.a2.v1 123426098 LSM domain containing protein, expressed 4 5275 Viridiplantae
Glyma.03G152100.1.p G. max Wm82.a2.v1 123426098 LSM domain containing protein, expressed 4 5275 Viridiplantae
Glyma.02G096000.1.p G. max Wm82.a2.v1 123426098 LSM domain containing protein, expressed 4 5275 Viridiplantae