Gene : Cagra.8967s0006 C. grandiflora v1.1
Defline:  (1 of 2) KOG3428 - Small nuclear ribonucleoprotein SMD1 and related snRNPs Genomic Order:  6
Name:  ? Cagra.8967s0006 Secondary Identifier:  ? PAC:28893822
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.8967s0006 0.5kb upstream 0.5kb upstream 2234 true Scaffold8967: 20700-22933 Capsella grandiflora
Cagra.8967s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold8967: 22434-22933 Capsella grandiflora
Cagra.8967s0006 0.5kb downstream 0.5kb downstream 2234 true Scaffold8967: 20200-22433 Capsella grandiflora
Cagra.8967s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold8967: 20200-20699 Capsella grandiflora
Cagra.8967s0006 1.0kb upstream 1.0kb upstream 2734 true Scaffold8967: 20700-23433 Capsella grandiflora
Cagra.8967s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold8967: 22434-23433 Capsella grandiflora
Cagra.8967s0006 1.0kb downstream 1.0kb downstream 2734 true Scaffold8967: 19700-22433 Capsella grandiflora
Cagra.8967s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold8967: 19700-20699 Capsella grandiflora
Cagra.8967s0006 2.0kb upstream 2.0kb upstream 3734 true Scaffold8967: 20700-24433 Capsella grandiflora
Cagra.8967s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold8967: 22434-24433 Capsella grandiflora
Cagra.8967s0006 2.0kb downstream 2.0kb downstream 3734 true Scaffold8967: 18700-22433 Capsella grandiflora
Cagra.8967s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold8967: 18700-20699 Capsella grandiflora
Cagra.8967s0006 5.0kb upstream 5.0kb upstream 6734 true Scaffold8967: 20700-27433 Capsella grandiflora
Cagra.8967s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold8967: 22434-27433 Capsella grandiflora
Cagra.8967s0006 5.0kb downstream 5.0kb downstream 6734 true Scaffold8967: 15700-22433 Capsella grandiflora
Cagra.8967s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold8967: 15700-20699 Capsella grandiflora
Cagra.8967s0006 10.0kb upstream 10.0kb upstream 11734 true Scaffold8967: 20700-32433 Capsella grandiflora
Cagra.8967s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold8967: 22434-32433 Capsella grandiflora
Cagra.8967s0006 10.0kb downstream 10.0kb downstream 11734 true Scaffold8967: 10700-22433 Capsella grandiflora
Cagra.8967s0006 10.0kb downstream 10.0kb downstream 10000 false Scaffold8967: 10700-20699 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362948 5261 Brassicaceae View MSA
123839137 5264 Brassicales-Malvales View MSA
124351091 5266 SBM View MSA
124247132 5268 Malvidae View MSA
124060560 5270 Rosid View MSA
123750770 5271 Pentapetalae View MSA
122792948 5272 Eudicot View MSA
122045867 5273 Angiosperm View MSA
121351003 5274 Embryophyte View MSA
123426098 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain