Gene : AT4G02840 A. thaliana TAIR10
Defline:  (1 of 2) K11087 - small nuclear ribonucleoprotein D1 (SNRPD1, SMD1) Genomic Order:  332
Name:  ? AT4G02840 Secondary Identifier:  ? PAC:19648319
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G02840 0.5kb upstream 0.5kb upstream 2360 true Chr4: 1264127-1266486 Arabidopsis thaliana
AT4G02840 0.5kb upstream 0.5kb upstream 500 false Chr4: 1264127-1264626 Arabidopsis thaliana
AT4G02840 0.5kb downstream 0.5kb downstream 2360 true Chr4: 1264627-1266986 Arabidopsis thaliana
AT4G02840 0.5kb downstream 0.5kb downstream 500 false Chr4: 1266487-1266986 Arabidopsis thaliana
AT4G02840 1.0kb upstream 1.0kb upstream 2860 true Chr4: 1263627-1266486 Arabidopsis thaliana
AT4G02840 1.0kb upstream 1.0kb upstream 1000 false Chr4: 1263627-1264626 Arabidopsis thaliana
AT4G02840 1.0kb downstream 1.0kb downstream 2860 true Chr4: 1264627-1267486 Arabidopsis thaliana
AT4G02840 1.0kb downstream 1.0kb downstream 1000 false Chr4: 1266487-1267486 Arabidopsis thaliana
AT4G02840 2.0kb upstream 2.0kb upstream 3860 true Chr4: 1262627-1266486 Arabidopsis thaliana
AT4G02840 2.0kb upstream 2.0kb upstream 2000 false Chr4: 1262627-1264626 Arabidopsis thaliana
AT4G02840 2.0kb downstream 2.0kb downstream 3860 true Chr4: 1264627-1268486 Arabidopsis thaliana
AT4G02840 2.0kb downstream 2.0kb downstream 2000 false Chr4: 1266487-1268486 Arabidopsis thaliana
AT4G02840 5.0kb upstream 5.0kb upstream 6860 true Chr4: 1259627-1266486 Arabidopsis thaliana
AT4G02840 5.0kb upstream 5.0kb upstream 5000 false Chr4: 1259627-1264626 Arabidopsis thaliana
AT4G02840 5.0kb downstream 5.0kb downstream 6860 true Chr4: 1264627-1271486 Arabidopsis thaliana
AT4G02840 5.0kb downstream 5.0kb downstream 5000 false Chr4: 1266487-1271486 Arabidopsis thaliana
AT4G02840 10.0kb upstream 10.0kb upstream 11860 true Chr4: 1254627-1266486 Arabidopsis thaliana
AT4G02840 10.0kb upstream 10.0kb upstream 10000 false Chr4: 1254627-1264626 Arabidopsis thaliana
AT4G02840 10.0kb downstream 10.0kb downstream 11860 true Chr4: 1264627-1276486 Arabidopsis thaliana
AT4G02840 10.0kb downstream 10.0kb downstream 10000 false Chr4: 1266487-1276486 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362948 5261 Brassicaceae View MSA
123839137 5264 Brassicales-Malvales View MSA
124351091 5266 SBM View MSA
124247132 5268 Malvidae View MSA
124060560 5270 Rosid View MSA
123750770 5271 Pentapetalae View MSA
122792948 5272 Eudicot View MSA
122045867 5273 Angiosperm View MSA
121351003 5274 Embryophyte View MSA
123426098 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.543        
cufflinks 11.424       High
cufflinks 4.538        
cufflinks 9.712        
cufflinks 3.793       Low
cufflinks 10.428        

0 Strain