Gene : Glyma.18G285500 G. max Wm82.a2.v1
Defline:  (1 of 10) PTHR23338 - SMALL NUCLEAR RIBONUCLEOPROTEIN SM Genomic Order:  2855
Name:  ? Glyma.18G285500 Secondary Identifier:  ? PAC:30556678
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G285500 0.5kb upstream 0.5kb upstream 2810 true Chr18: 56580082-56582891 Glycine max
Glyma.18G285500 0.5kb upstream 0.5kb upstream 500 false Chr18: 56582392-56582891 Glycine max
Glyma.18G285500 0.5kb downstream 0.5kb downstream 2810 true Chr18: 56579582-56582391 Glycine max
Glyma.18G285500 0.5kb downstream 0.5kb downstream 500 false Chr18: 56579582-56580081 Glycine max
Glyma.18G285500 1.0kb upstream 1.0kb upstream 3310 true Chr18: 56580082-56583391 Glycine max
Glyma.18G285500 1.0kb upstream 1.0kb upstream 1000 false Chr18: 56582392-56583391 Glycine max
Glyma.18G285500 1.0kb downstream 1.0kb downstream 3310 true Chr18: 56579082-56582391 Glycine max
Glyma.18G285500 1.0kb downstream 1.0kb downstream 1000 false Chr18: 56579082-56580081 Glycine max
Glyma.18G285500 2.0kb upstream 2.0kb upstream 4310 true Chr18: 56580082-56584391 Glycine max
Glyma.18G285500 2.0kb upstream 2.0kb upstream 2000 false Chr18: 56582392-56584391 Glycine max
Glyma.18G285500 2.0kb downstream 2.0kb downstream 4310 true Chr18: 56578082-56582391 Glycine max
Glyma.18G285500 2.0kb downstream 2.0kb downstream 2000 false Chr18: 56578082-56580081 Glycine max
Glyma.18G285500 5.0kb upstream 5.0kb upstream 7310 true Chr18: 56580082-56587391 Glycine max
Glyma.18G285500 5.0kb upstream 5.0kb upstream 5000 false Chr18: 56582392-56587391 Glycine max
Glyma.18G285500 5.0kb downstream 5.0kb downstream 7310 true Chr18: 56575082-56582391 Glycine max
Glyma.18G285500 5.0kb downstream 5.0kb downstream 5000 false Chr18: 56575082-56580081 Glycine max
Glyma.18G285500 10.0kb upstream 10.0kb upstream 12310 true Chr18: 56580082-56592391 Glycine max
Glyma.18G285500 10.0kb upstream 10.0kb upstream 10000 false Chr18: 56582392-56592391 Glycine max
Glyma.18G285500 10.0kb downstream 10.0kb downstream 12310 true Chr18: 56570082-56582391 Glycine max
Glyma.18G285500 10.0kb downstream 10.0kb downstream 10000 false Chr18: 56570082-56580081 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314520 5265 Fabidae View MSA
124060560 5270 Rosid View MSA
123750770 5271 Pentapetalae View MSA
122792948 5272 Eudicot View MSA
122045867 5273 Angiosperm View MSA
121351003 5274 Embryophyte View MSA
123426098 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.0625 0.0 57.0425    
cufflinks 22.6529 0.0 61.1158 High  
cufflinks 10.3169 0.0 29.6874   Low
cufflinks 12.4987 0.0 35.2666   Low
cufflinks 20.0289 0.0 54.367 High  
cufflinks 22.4783 0.0 60.6586    
cufflinks 19.6483 0.0 53.4038    
cufflinks 17.6446 0.0 48.2215    
cufflinks 18.3776 0.0 50.1293    
cufflinks 4.935        
cufflinks 1.543       Low
cufflinks 5.578        
cufflinks 10.203     High High
cufflinks 13.936     High High
cufflinks 2.169       Low
cufflinks 4.671        
cufflinks 3.902        
cufflinks 5.624        
cufflinks 8.283     High High
cufflinks 3.508        
cufflinks 3.088        
cufflinks 4.489        
cufflinks 5.584        
cufflinks 2.81        
cufflinks 4.039        
cufflinks 3.896        

0 Strain