Gene : AT3G07590 A. thaliana TAIR10
Defline:  (1 of 2) K11087 - small nuclear ribonucleoprotein D1 (SNRPD1, SMD1) Genomic Order:  751
Name:  ? AT3G07590 Secondary Identifier:  ? PAC:19664717
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G07590 0.5kb upstream 0.5kb upstream 2025 true Chr3: 2422570-2424594 Arabidopsis thaliana
AT3G07590 0.5kb upstream 0.5kb upstream 500 false Chr3: 2422570-2423069 Arabidopsis thaliana
AT3G07590 0.5kb downstream 0.5kb downstream 2025 true Chr3: 2423070-2425094 Arabidopsis thaliana
AT3G07590 0.5kb downstream 0.5kb downstream 500 false Chr3: 2424595-2425094 Arabidopsis thaliana
AT3G07590 1.0kb upstream 1.0kb upstream 2525 true Chr3: 2422070-2424594 Arabidopsis thaliana
AT3G07590 1.0kb upstream 1.0kb upstream 1000 false Chr3: 2422070-2423069 Arabidopsis thaliana
AT3G07590 1.0kb downstream 1.0kb downstream 2525 true Chr3: 2423070-2425594 Arabidopsis thaliana
AT3G07590 1.0kb downstream 1.0kb downstream 1000 false Chr3: 2424595-2425594 Arabidopsis thaliana
AT3G07590 2.0kb upstream 2.0kb upstream 3525 true Chr3: 2421070-2424594 Arabidopsis thaliana
AT3G07590 2.0kb upstream 2.0kb upstream 2000 false Chr3: 2421070-2423069 Arabidopsis thaliana
AT3G07590 2.0kb downstream 2.0kb downstream 3525 true Chr3: 2423070-2426594 Arabidopsis thaliana
AT3G07590 2.0kb downstream 2.0kb downstream 2000 false Chr3: 2424595-2426594 Arabidopsis thaliana
AT3G07590 5.0kb upstream 5.0kb upstream 6525 true Chr3: 2418070-2424594 Arabidopsis thaliana
AT3G07590 5.0kb upstream 5.0kb upstream 5000 false Chr3: 2418070-2423069 Arabidopsis thaliana
AT3G07590 5.0kb downstream 5.0kb downstream 6525 true Chr3: 2423070-2429594 Arabidopsis thaliana
AT3G07590 5.0kb downstream 5.0kb downstream 5000 false Chr3: 2424595-2429594 Arabidopsis thaliana
AT3G07590 10.0kb upstream 10.0kb upstream 11525 true Chr3: 2413070-2424594 Arabidopsis thaliana
AT3G07590 10.0kb upstream 10.0kb upstream 10000 false Chr3: 2413070-2423069 Arabidopsis thaliana
AT3G07590 10.0kb downstream 10.0kb downstream 11525 true Chr3: 2423070-2434594 Arabidopsis thaliana
AT3G07590 10.0kb downstream 10.0kb downstream 10000 false Chr3: 2424595-2434594 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362253 5261 Brassicaceae View MSA
123839137 5264 Brassicales-Malvales View MSA
124351091 5266 SBM View MSA
124247132 5268 Malvidae View MSA
124060560 5270 Rosid View MSA
123750770 5271 Pentapetalae View MSA
122792948 5272 Eudicot View MSA
122045867 5273 Angiosperm View MSA
121351003 5274 Embryophyte View MSA
123426098 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.36        
cufflinks 6.205        
cufflinks 2.649       Low
cufflinks 5.621        
cufflinks 2.622       Low
cufflinks 7.586       High

0 Strain