Gene : Thecc1EG043808 T. cacao v1.1
Defline:  (1 of 85) PF14223 - gag-polypeptide of LTR copia-type (UBN2) Genomic Order:  1020
Name:  ? Thecc1EG043808 Secondary Identifier:  ? PAC:27443320
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

Correlated Expression Displayer

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG043808 0.5kb upstream 0.5kb upstream 10415 true scaffold_10r: 10068757-10079171 Theobroma cacao
Thecc1EG043808 0.5kb upstream 0.5kb upstream 500 false scaffold_10r: 10068757-10069256 Theobroma cacao
Thecc1EG043808 0.5kb downstream 0.5kb downstream 10415 true scaffold_10r: 10069257-10079671 Theobroma cacao
Thecc1EG043808 0.5kb downstream 0.5kb downstream 500 false scaffold_10r: 10079172-10079671 Theobroma cacao
Thecc1EG043808 1.0kb upstream 1.0kb upstream 10915 true scaffold_10r: 10068257-10079171 Theobroma cacao
Thecc1EG043808 1.0kb upstream 1.0kb upstream 1000 false scaffold_10r: 10068257-10069256 Theobroma cacao
Thecc1EG043808 1.0kb downstream 1.0kb downstream 10915 true scaffold_10r: 10069257-10080171 Theobroma cacao
Thecc1EG043808 1.0kb downstream 1.0kb downstream 1000 false scaffold_10r: 10079172-10080171 Theobroma cacao
Thecc1EG043808 2.0kb upstream 2.0kb upstream 11915 true scaffold_10r: 10067257-10079171 Theobroma cacao
Thecc1EG043808 2.0kb upstream 2.0kb upstream 2000 false scaffold_10r: 10067257-10069256 Theobroma cacao
Thecc1EG043808 2.0kb downstream 2.0kb downstream 11915 true scaffold_10r: 10069257-10081171 Theobroma cacao
Thecc1EG043808 2.0kb downstream 2.0kb downstream 2000 false scaffold_10r: 10079172-10081171 Theobroma cacao
Thecc1EG043808 5.0kb upstream 5.0kb upstream 14915 true scaffold_10r: 10064257-10079171 Theobroma cacao
Thecc1EG043808 5.0kb upstream 5.0kb upstream 5000 false scaffold_10r: 10064257-10069256 Theobroma cacao
Thecc1EG043808 5.0kb downstream 5.0kb downstream 14915 true scaffold_10r: 10069257-10084171 Theobroma cacao
Thecc1EG043808 5.0kb downstream 5.0kb downstream 5000 false scaffold_10r: 10079172-10084171 Theobroma cacao
Thecc1EG043808 10.0kb upstream 10.0kb upstream 19915 true scaffold_10r: 10059257-10079171 Theobroma cacao
Thecc1EG043808 10.0kb upstream 10.0kb upstream 10000 false scaffold_10r: 10059257-10069256 Theobroma cacao
Thecc1EG043808 10.0kb downstream 10.0kb downstream 19915 true scaffold_10r: 10069257-10089171 Theobroma cacao
Thecc1EG043808 10.0kb downstream 10.0kb downstream 10000 false scaffold_10r: 10079172-10089171 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123838027 5264 Brassicales-Malvales View MSA
124350809 5266 SBM View MSA
124249328 5268 Malvidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain