Gene : Thecc1EG010085 T. cacao v1.1
Defline:  (1 of 85) PF14223 - gag-polypeptide of LTR copia-type (UBN2) Genomic Order:  2361
Name:  ? Thecc1EG010085 Secondary Identifier:  ? PAC:27463774
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG010085 0.5kb upstream 0.5kb upstream 5295 true scaffold_2: 30510252-30515546 Theobroma cacao
Thecc1EG010085 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 30515047-30515546 Theobroma cacao
Thecc1EG010085 0.5kb downstream 0.5kb downstream 5295 true scaffold_2: 30509752-30515046 Theobroma cacao
Thecc1EG010085 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 30509752-30510251 Theobroma cacao
Thecc1EG010085 1.0kb upstream 1.0kb upstream 5795 true scaffold_2: 30510252-30516046 Theobroma cacao
Thecc1EG010085 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 30515047-30516046 Theobroma cacao
Thecc1EG010085 1.0kb downstream 1.0kb downstream 5795 true scaffold_2: 30509252-30515046 Theobroma cacao
Thecc1EG010085 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 30509252-30510251 Theobroma cacao
Thecc1EG010085 2.0kb upstream 2.0kb upstream 6795 true scaffold_2: 30510252-30517046 Theobroma cacao
Thecc1EG010085 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 30515047-30517046 Theobroma cacao
Thecc1EG010085 2.0kb downstream 2.0kb downstream 6795 true scaffold_2: 30508252-30515046 Theobroma cacao
Thecc1EG010085 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 30508252-30510251 Theobroma cacao
Thecc1EG010085 5.0kb upstream 5.0kb upstream 9795 true scaffold_2: 30510252-30520046 Theobroma cacao
Thecc1EG010085 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 30515047-30520046 Theobroma cacao
Thecc1EG010085 5.0kb downstream 5.0kb downstream 9795 true scaffold_2: 30505252-30515046 Theobroma cacao
Thecc1EG010085 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 30505252-30510251 Theobroma cacao
Thecc1EG010085 10.0kb upstream 10.0kb upstream 14795 true scaffold_2: 30510252-30525046 Theobroma cacao
Thecc1EG010085 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 30515047-30525046 Theobroma cacao
Thecc1EG010085 10.0kb downstream 10.0kb downstream 14795 true scaffold_2: 30500252-30515046 Theobroma cacao
Thecc1EG010085 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 30500252-30510251 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123838027 5264 Brassicales-Malvales View MSA
124350809 5266 SBM View MSA
124249328 5268 Malvidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain