Gene : Thecc1EG010552 T. cacao v1.1
Defline:  (1 of 85) PF14223 - gag-polypeptide of LTR copia-type (UBN2) Genomic Order:  2618
Name:  ? Thecc1EG010552 Secondary Identifier:  ? PAC:27461190
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG010552 0.5kb upstream 0.5kb upstream 3245 true scaffold_2: 34267438-34270682 Theobroma cacao
Thecc1EG010552 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 34270183-34270682 Theobroma cacao
Thecc1EG010552 0.5kb downstream 0.5kb downstream 3245 true scaffold_2: 34266938-34270182 Theobroma cacao
Thecc1EG010552 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 34266938-34267437 Theobroma cacao
Thecc1EG010552 1.0kb upstream 1.0kb upstream 3745 true scaffold_2: 34267438-34271182 Theobroma cacao
Thecc1EG010552 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 34270183-34271182 Theobroma cacao
Thecc1EG010552 1.0kb downstream 1.0kb downstream 3745 true scaffold_2: 34266438-34270182 Theobroma cacao
Thecc1EG010552 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 34266438-34267437 Theobroma cacao
Thecc1EG010552 2.0kb upstream 2.0kb upstream 4745 true scaffold_2: 34267438-34272182 Theobroma cacao
Thecc1EG010552 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 34270183-34272182 Theobroma cacao
Thecc1EG010552 2.0kb downstream 2.0kb downstream 4745 true scaffold_2: 34265438-34270182 Theobroma cacao
Thecc1EG010552 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 34265438-34267437 Theobroma cacao
Thecc1EG010552 5.0kb upstream 5.0kb upstream 7745 true scaffold_2: 34267438-34275182 Theobroma cacao
Thecc1EG010552 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 34270183-34275182 Theobroma cacao
Thecc1EG010552 5.0kb downstream 5.0kb downstream 7745 true scaffold_2: 34262438-34270182 Theobroma cacao
Thecc1EG010552 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 34262438-34267437 Theobroma cacao
Thecc1EG010552 10.0kb upstream 10.0kb upstream 12745 true scaffold_2: 34267438-34280182 Theobroma cacao
Thecc1EG010552 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 34270183-34280182 Theobroma cacao
Thecc1EG010552 10.0kb downstream 10.0kb downstream 12745 true scaffold_2: 34257438-34270182 Theobroma cacao
Thecc1EG010552 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 34257438-34267437 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123838027 5264 Brassicales-Malvales View MSA
124350809 5266 SBM View MSA
124249328 5268 Malvidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain