Gene : Thecc1EG011547 T. cacao v1.1
Defline:  (1 of 131) PF00665 - Integrase core domain (rve) Genomic Order:  3307
Name:  ? Thecc1EG011547 Secondary Identifier:  ? PAC:27464030
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG011547 0.5kb upstream 0.5kb upstream 1992 true scaffold_2: 40687807-40689798 Theobroma cacao
Thecc1EG011547 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 40689299-40689798 Theobroma cacao
Thecc1EG011547 0.5kb downstream 0.5kb downstream 1992 true scaffold_2: 40687307-40689298 Theobroma cacao
Thecc1EG011547 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 40687307-40687806 Theobroma cacao
Thecc1EG011547 1.0kb upstream 1.0kb upstream 2492 true scaffold_2: 40687807-40690298 Theobroma cacao
Thecc1EG011547 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 40689299-40690298 Theobroma cacao
Thecc1EG011547 1.0kb downstream 1.0kb downstream 2492 true scaffold_2: 40686807-40689298 Theobroma cacao
Thecc1EG011547 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 40686807-40687806 Theobroma cacao
Thecc1EG011547 2.0kb upstream 2.0kb upstream 3492 true scaffold_2: 40687807-40691298 Theobroma cacao
Thecc1EG011547 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 40689299-40691298 Theobroma cacao
Thecc1EG011547 2.0kb downstream 2.0kb downstream 3492 true scaffold_2: 40685807-40689298 Theobroma cacao
Thecc1EG011547 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 40685807-40687806 Theobroma cacao
Thecc1EG011547 5.0kb upstream 5.0kb upstream 6492 true scaffold_2: 40687807-40694298 Theobroma cacao
Thecc1EG011547 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 40689299-40694298 Theobroma cacao
Thecc1EG011547 5.0kb downstream 5.0kb downstream 6492 true scaffold_2: 40682807-40689298 Theobroma cacao
Thecc1EG011547 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 40682807-40687806 Theobroma cacao
Thecc1EG011547 10.0kb upstream 10.0kb upstream 11492 true scaffold_2: 40687807-40699298 Theobroma cacao
Thecc1EG011547 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 40689299-40699298 Theobroma cacao
Thecc1EG011547 10.0kb downstream 10.0kb downstream 11492 true scaffold_2: 40677807-40689298 Theobroma cacao
Thecc1EG011547 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 40677807-40687806 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823550 5264 Brassicales-Malvales View MSA
124319627 5266 SBM View MSA
124168160 5268 Malvidae View MSA
124041100 5270 Rosid View MSA
123753005 5271 Pentapetalae View MSA
122774912 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain