Gene : Thecc1EG012831 T. cacao v1.1
Defline:  (1 of 58) PTHR11439//PTHR11439:SF192 - GAG-POL-RELATED RETROTRANSPOSON // SUBFAMILY NOT NAMED Genomic Order:  565
Name:  ? Thecc1EG012831 Secondary Identifier:  ? PAC:27448181
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG012831 0.5kb upstream 0.5kb upstream 12335 true scaffold_3: 6375588-6387922 Theobroma cacao
Thecc1EG012831 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 6375588-6376087 Theobroma cacao
Thecc1EG012831 0.5kb downstream 0.5kb downstream 12335 true scaffold_3: 6376088-6388422 Theobroma cacao
Thecc1EG012831 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 6387923-6388422 Theobroma cacao
Thecc1EG012831 1.0kb upstream 1.0kb upstream 12835 true scaffold_3: 6375088-6387922 Theobroma cacao
Thecc1EG012831 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 6375088-6376087 Theobroma cacao
Thecc1EG012831 1.0kb downstream 1.0kb downstream 12835 true scaffold_3: 6376088-6388922 Theobroma cacao
Thecc1EG012831 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 6387923-6388922 Theobroma cacao
Thecc1EG012831 2.0kb upstream 2.0kb upstream 13835 true scaffold_3: 6374088-6387922 Theobroma cacao
Thecc1EG012831 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 6374088-6376087 Theobroma cacao
Thecc1EG012831 2.0kb downstream 2.0kb downstream 13835 true scaffold_3: 6376088-6389922 Theobroma cacao
Thecc1EG012831 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 6387923-6389922 Theobroma cacao
Thecc1EG012831 5.0kb upstream 5.0kb upstream 16835 true scaffold_3: 6371088-6387922 Theobroma cacao
Thecc1EG012831 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 6371088-6376087 Theobroma cacao
Thecc1EG012831 5.0kb downstream 5.0kb downstream 16835 true scaffold_3: 6376088-6392922 Theobroma cacao
Thecc1EG012831 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 6387923-6392922 Theobroma cacao
Thecc1EG012831 10.0kb upstream 10.0kb upstream 21835 true scaffold_3: 6366088-6387922 Theobroma cacao
Thecc1EG012831 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 6366088-6376087 Theobroma cacao
Thecc1EG012831 10.0kb downstream 10.0kb downstream 21835 true scaffold_3: 6376088-6397922 Theobroma cacao
Thecc1EG012831 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 6387923-6397922 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123838027 5264 Brassicales-Malvales View MSA
124350809 5266 SBM View MSA
124249328 5268 Malvidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain