Gene : Thecc1EG018339 T. cacao v1.1
Defline:  (1 of 1) PF00098//PF13961//PF14223 - Zinc knuckle (zf-CCHC) // Domain of unknown function (DUF4219) (DUF4219) // gag-polypeptide of LTR copia-type (UBN2) Genomic Order:  779
Name:  ? Thecc1EG018339 Secondary Identifier:  ? PAC:27456121
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG018339 0.5kb upstream 0.5kb upstream 5104 true scaffold_4: 13777371-13782474 Theobroma cacao
Thecc1EG018339 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 13777371-13777870 Theobroma cacao
Thecc1EG018339 0.5kb downstream 0.5kb downstream 5104 true scaffold_4: 13777871-13782974 Theobroma cacao
Thecc1EG018339 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 13782475-13782974 Theobroma cacao
Thecc1EG018339 1.0kb upstream 1.0kb upstream 5604 true scaffold_4: 13776871-13782474 Theobroma cacao
Thecc1EG018339 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 13776871-13777870 Theobroma cacao
Thecc1EG018339 1.0kb downstream 1.0kb downstream 5604 true scaffold_4: 13777871-13783474 Theobroma cacao
Thecc1EG018339 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 13782475-13783474 Theobroma cacao
Thecc1EG018339 2.0kb upstream 2.0kb upstream 6604 true scaffold_4: 13775871-13782474 Theobroma cacao
Thecc1EG018339 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 13775871-13777870 Theobroma cacao
Thecc1EG018339 2.0kb downstream 2.0kb downstream 6604 true scaffold_4: 13777871-13784474 Theobroma cacao
Thecc1EG018339 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 13782475-13784474 Theobroma cacao
Thecc1EG018339 5.0kb upstream 5.0kb upstream 9604 true scaffold_4: 13772871-13782474 Theobroma cacao
Thecc1EG018339 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 13772871-13777870 Theobroma cacao
Thecc1EG018339 5.0kb downstream 5.0kb downstream 9604 true scaffold_4: 13777871-13787474 Theobroma cacao
Thecc1EG018339 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 13782475-13787474 Theobroma cacao
Thecc1EG018339 10.0kb upstream 10.0kb upstream 14604 true scaffold_4: 13767871-13782474 Theobroma cacao
Thecc1EG018339 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 13767871-13777870 Theobroma cacao
Thecc1EG018339 10.0kb downstream 10.0kb downstream 14604 true scaffold_4: 13777871-13792474 Theobroma cacao
Thecc1EG018339 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 13782475-13792474 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123838027 5264 Brassicales-Malvales View MSA
124350809 5266 SBM View MSA
124249328 5268 Malvidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain