Gene : Thecc1EG021260 T. cacao v1.1
Defline:  (1 of 5) 3.2.1.15//3.2.1.67 - Polygalacturonase / Pectinase // Galacturan 1,4-alpha-galacturonidase / Poly(galacturonate) hydrolase Genomic Order:  2909
Name:  ? Thecc1EG021260 Secondary Identifier:  ? PAC:27453836
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-1081 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG021260 0.5kb upstream 0.5kb upstream 2913 true scaffold_4: 32372789-32375701 Theobroma cacao
Thecc1EG021260 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 32372789-32373288 Theobroma cacao
Thecc1EG021260 0.5kb downstream 0.5kb downstream 2913 true scaffold_4: 32373289-32376201 Theobroma cacao
Thecc1EG021260 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 32375702-32376201 Theobroma cacao
Thecc1EG021260 1.0kb upstream 1.0kb upstream 3413 true scaffold_4: 32372289-32375701 Theobroma cacao
Thecc1EG021260 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 32372289-32373288 Theobroma cacao
Thecc1EG021260 1.0kb downstream 1.0kb downstream 3413 true scaffold_4: 32373289-32376701 Theobroma cacao
Thecc1EG021260 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 32375702-32376701 Theobroma cacao
Thecc1EG021260 2.0kb upstream 2.0kb upstream 4413 true scaffold_4: 32371289-32375701 Theobroma cacao
Thecc1EG021260 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 32371289-32373288 Theobroma cacao
Thecc1EG021260 2.0kb downstream 2.0kb downstream 4413 true scaffold_4: 32373289-32377701 Theobroma cacao
Thecc1EG021260 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 32375702-32377701 Theobroma cacao
Thecc1EG021260 5.0kb upstream 5.0kb upstream 7413 true scaffold_4: 32368289-32375701 Theobroma cacao
Thecc1EG021260 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 32368289-32373288 Theobroma cacao
Thecc1EG021260 5.0kb downstream 5.0kb downstream 7413 true scaffold_4: 32373289-32380701 Theobroma cacao
Thecc1EG021260 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 32375702-32380701 Theobroma cacao
Thecc1EG021260 10.0kb upstream 10.0kb upstream 12413 true scaffold_4: 32363289-32375701 Theobroma cacao
Thecc1EG021260 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 32363289-32373288 Theobroma cacao
Thecc1EG021260 10.0kb downstream 10.0kb downstream 12413 true scaffold_4: 32373289-32385701 Theobroma cacao
Thecc1EG021260 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 32375702-32385701 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123837195 5264 Brassicales-Malvales View MSA
124351159 5266 SBM View MSA
124251239 5268 Malvidae View MSA
124071236 5270 Rosid View MSA
123746324 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain