Gene : Thecc1EG024769 T. cacao v1.1
Defline:  (1 of 154) PTHR11439//PTHR11439:SF185 - GAG-POL-RELATED RETROTRANSPOSON // SUBFAMILY NOT NAMED Genomic Order:  1638
Name:  ? Thecc1EG024769 Secondary Identifier:  ? PAC:27420991
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG024769 0.5kb upstream 0.5kb upstream 2155 true scaffold_5: 28430364-28432518 Theobroma cacao
Thecc1EG024769 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 28430364-28430863 Theobroma cacao
Thecc1EG024769 0.5kb downstream 0.5kb downstream 2155 true scaffold_5: 28430864-28433018 Theobroma cacao
Thecc1EG024769 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 28432519-28433018 Theobroma cacao
Thecc1EG024769 1.0kb upstream 1.0kb upstream 2655 true scaffold_5: 28429864-28432518 Theobroma cacao
Thecc1EG024769 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 28429864-28430863 Theobroma cacao
Thecc1EG024769 1.0kb downstream 1.0kb downstream 2655 true scaffold_5: 28430864-28433518 Theobroma cacao
Thecc1EG024769 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 28432519-28433518 Theobroma cacao
Thecc1EG024769 2.0kb upstream 2.0kb upstream 3655 true scaffold_5: 28428864-28432518 Theobroma cacao
Thecc1EG024769 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 28428864-28430863 Theobroma cacao
Thecc1EG024769 2.0kb downstream 2.0kb downstream 3655 true scaffold_5: 28430864-28434518 Theobroma cacao
Thecc1EG024769 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 28432519-28434518 Theobroma cacao
Thecc1EG024769 5.0kb upstream 5.0kb upstream 6655 true scaffold_5: 28425864-28432518 Theobroma cacao
Thecc1EG024769 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 28425864-28430863 Theobroma cacao
Thecc1EG024769 5.0kb downstream 5.0kb downstream 6655 true scaffold_5: 28430864-28437518 Theobroma cacao
Thecc1EG024769 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 28432519-28437518 Theobroma cacao
Thecc1EG024769 10.0kb upstream 10.0kb upstream 11655 true scaffold_5: 28420864-28432518 Theobroma cacao
Thecc1EG024769 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 28420864-28430863 Theobroma cacao
Thecc1EG024769 10.0kb downstream 10.0kb downstream 11655 true scaffold_5: 28430864-28442518 Theobroma cacao
Thecc1EG024769 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 28432519-28442518 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029855 5273 Angiosperm View MSA
123820628 5264 Brassicales-Malvales Singleton cluster - no MSA
124316835 5266 SBM Singleton cluster - no MSA
124165628 5268 Malvidae Singleton cluster - no MSA
123889293 5270 Rosid Singleton cluster - no MSA
123753008 5271 Pentapetalae View MSA
122774914 5272 Eudicot View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain