Gene : Pavir.2NG046900 P. virgatum v4.1
Defline:  (1 of 2) K12821 - pre-mRNA-processing factor 40 (PRPF40, PRP40) Genomic Order:  435
Name:  ? Pavir.2NG046900 Secondary Identifier:  ? PAC:37586118
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.2NG046900 0.5kb upstream 0.5kb upstream 14912 true Chr02N: 6242380-6257291 Panicum virgatum
Pavir.2NG046900 0.5kb upstream 0.5kb upstream 500 false Chr02N: 6242380-6242879 Panicum virgatum
Pavir.2NG046900 0.5kb downstream 0.5kb downstream 14912 true Chr02N: 6242880-6257791 Panicum virgatum
Pavir.2NG046900 0.5kb downstream 0.5kb downstream 500 false Chr02N: 6257292-6257791 Panicum virgatum
Pavir.2NG046900 1.0kb upstream 1.0kb upstream 15412 true Chr02N: 6241880-6257291 Panicum virgatum
Pavir.2NG046900 1.0kb upstream 1.0kb upstream 1000 false Chr02N: 6241880-6242879 Panicum virgatum
Pavir.2NG046900 1.0kb downstream 1.0kb downstream 15412 true Chr02N: 6242880-6258291 Panicum virgatum
Pavir.2NG046900 1.0kb downstream 1.0kb downstream 1000 false Chr02N: 6257292-6258291 Panicum virgatum
Pavir.2NG046900 2.0kb upstream 2.0kb upstream 16412 true Chr02N: 6240880-6257291 Panicum virgatum
Pavir.2NG046900 2.0kb upstream 2.0kb upstream 2000 false Chr02N: 6240880-6242879 Panicum virgatum
Pavir.2NG046900 2.0kb downstream 2.0kb downstream 16412 true Chr02N: 6242880-6259291 Panicum virgatum
Pavir.2NG046900 2.0kb downstream 2.0kb downstream 2000 false Chr02N: 6257292-6259291 Panicum virgatum
Pavir.2NG046900 5.0kb upstream 5.0kb upstream 19412 true Chr02N: 6237880-6257291 Panicum virgatum
Pavir.2NG046900 5.0kb upstream 5.0kb upstream 5000 false Chr02N: 6237880-6242879 Panicum virgatum
Pavir.2NG046900 5.0kb downstream 5.0kb downstream 19412 true Chr02N: 6242880-6262291 Panicum virgatum
Pavir.2NG046900 5.0kb downstream 5.0kb downstream 5000 false Chr02N: 6257292-6262291 Panicum virgatum
Pavir.2NG046900 10.0kb upstream 10.0kb upstream 24412 true Chr02N: 6232880-6257291 Panicum virgatum
Pavir.2NG046900 10.0kb upstream 10.0kb upstream 10000 false Chr02N: 6232880-6242879 Panicum virgatum
Pavir.2NG046900 10.0kb downstream 10.0kb downstream 24412 true Chr02N: 6242880-6267291 Panicum virgatum
Pavir.2NG046900 10.0kb downstream 10.0kb downstream 10000 false Chr02N: 6257292-6267291 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122082003 5267 Panicoideae Singleton cluster - no MSA
124583371 5269 Grass View MSA
122049454 5273 Angiosperm View MSA
121347556 5274 Embryophyte View MSA
123423988 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain