Gene : Thecc1EG025656 T. cacao v1.1
Defline:  (1 of 16) PF00098//PF03732 - Zinc knuckle (zf-CCHC) // Retrotransposon gag protein (Retrotrans_gag) Genomic Order:  2288
Name:  ? Thecc1EG025656 Secondary Identifier:  ? PAC:27421233
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG025656 0.5kb upstream 0.5kb upstream 2116 true scaffold_5: 33963649-33965764 Theobroma cacao
Thecc1EG025656 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 33963649-33964148 Theobroma cacao
Thecc1EG025656 0.5kb downstream 0.5kb downstream 2116 true scaffold_5: 33964149-33966264 Theobroma cacao
Thecc1EG025656 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 33965765-33966264 Theobroma cacao
Thecc1EG025656 1.0kb upstream 1.0kb upstream 2616 true scaffold_5: 33963149-33965764 Theobroma cacao
Thecc1EG025656 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 33963149-33964148 Theobroma cacao
Thecc1EG025656 1.0kb downstream 1.0kb downstream 2616 true scaffold_5: 33964149-33966764 Theobroma cacao
Thecc1EG025656 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 33965765-33966764 Theobroma cacao
Thecc1EG025656 2.0kb upstream 2.0kb upstream 3616 true scaffold_5: 33962149-33965764 Theobroma cacao
Thecc1EG025656 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 33962149-33964148 Theobroma cacao
Thecc1EG025656 2.0kb downstream 2.0kb downstream 3616 true scaffold_5: 33964149-33967764 Theobroma cacao
Thecc1EG025656 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 33965765-33967764 Theobroma cacao
Thecc1EG025656 5.0kb upstream 5.0kb upstream 6616 true scaffold_5: 33959149-33965764 Theobroma cacao
Thecc1EG025656 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 33959149-33964148 Theobroma cacao
Thecc1EG025656 5.0kb downstream 5.0kb downstream 6616 true scaffold_5: 33964149-33970764 Theobroma cacao
Thecc1EG025656 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 33965765-33970764 Theobroma cacao
Thecc1EG025656 10.0kb upstream 10.0kb upstream 11616 true scaffold_5: 33954149-33965764 Theobroma cacao
Thecc1EG025656 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 33954149-33964148 Theobroma cacao
Thecc1EG025656 10.0kb downstream 10.0kb downstream 11616 true scaffold_5: 33964149-33975764 Theobroma cacao
Thecc1EG025656 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 33965765-33975764 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123838521 5264 Brassicales-Malvales View MSA
124322469 5266 SBM View MSA
124169151 5268 Malvidae View MSA
124074296 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain