Gene : Thecc1EG025870 T. cacao v1.1
Defline:  (1 of 47) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) Genomic Order:  2455
Name:  ? Thecc1EG025870 Secondary Identifier:  ? PAC:27422170
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG025870 0.5kb upstream 0.5kb upstream 1708 true scaffold_5: 35241265-35242972 Theobroma cacao
Thecc1EG025870 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 35241265-35241764 Theobroma cacao
Thecc1EG025870 0.5kb downstream 0.5kb downstream 1708 true scaffold_5: 35241765-35243472 Theobroma cacao
Thecc1EG025870 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 35242973-35243472 Theobroma cacao
Thecc1EG025870 1.0kb upstream 1.0kb upstream 2208 true scaffold_5: 35240765-35242972 Theobroma cacao
Thecc1EG025870 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 35240765-35241764 Theobroma cacao
Thecc1EG025870 1.0kb downstream 1.0kb downstream 2208 true scaffold_5: 35241765-35243972 Theobroma cacao
Thecc1EG025870 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 35242973-35243972 Theobroma cacao
Thecc1EG025870 2.0kb upstream 2.0kb upstream 3208 true scaffold_5: 35239765-35242972 Theobroma cacao
Thecc1EG025870 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 35239765-35241764 Theobroma cacao
Thecc1EG025870 2.0kb downstream 2.0kb downstream 3208 true scaffold_5: 35241765-35244972 Theobroma cacao
Thecc1EG025870 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 35242973-35244972 Theobroma cacao
Thecc1EG025870 5.0kb upstream 5.0kb upstream 6208 true scaffold_5: 35236765-35242972 Theobroma cacao
Thecc1EG025870 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 35236765-35241764 Theobroma cacao
Thecc1EG025870 5.0kb downstream 5.0kb downstream 6208 true scaffold_5: 35241765-35247972 Theobroma cacao
Thecc1EG025870 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 35242973-35247972 Theobroma cacao
Thecc1EG025870 10.0kb upstream 10.0kb upstream 11208 true scaffold_5: 35231765-35242972 Theobroma cacao
Thecc1EG025870 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 35231765-35241764 Theobroma cacao
Thecc1EG025870 10.0kb downstream 10.0kb downstream 11208 true scaffold_5: 35241765-35252972 Theobroma cacao
Thecc1EG025870 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 35242973-35252972 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823574 5264 Brassicales-Malvales View MSA
124319650 5266 SBM View MSA
124249193 5268 Malvidae View MSA
123952340 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain