Gene : Pavir.3NG189700 P. virgatum v4.1
Defline:  (1 of 2) PTHR21089:SF1 - BIFUNCTIONAL 3-DEHYDROQUINATE DEHYDRATASE/SHIKIMATE DEHYDROGENASE, CHLOROPLASTIC Genomic Order:  1736
Name:  ? Pavir.3NG189700 Secondary Identifier:  ? PAC:37641953
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum ARO-PWY Panicum virgatum pathologic  
Pvirgatum PWY-6163 Panicum virgatum pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.3NG189700 0.5kb upstream 0.5kb upstream 6471 true Chr03N: 35284066-35290536 Panicum virgatum
Pavir.3NG189700 0.5kb upstream 0.5kb upstream 500 false Chr03N: 35284066-35284565 Panicum virgatum
Pavir.3NG189700 0.5kb downstream 0.5kb downstream 6471 true Chr03N: 35284566-35291036 Panicum virgatum
Pavir.3NG189700 0.5kb downstream 0.5kb downstream 500 false Chr03N: 35290537-35291036 Panicum virgatum
Pavir.3NG189700 1.0kb upstream 1.0kb upstream 6971 true Chr03N: 35283566-35290536 Panicum virgatum
Pavir.3NG189700 1.0kb upstream 1.0kb upstream 1000 false Chr03N: 35283566-35284565 Panicum virgatum
Pavir.3NG189700 1.0kb downstream 1.0kb downstream 6971 true Chr03N: 35284566-35291536 Panicum virgatum
Pavir.3NG189700 1.0kb downstream 1.0kb downstream 1000 false Chr03N: 35290537-35291536 Panicum virgatum
Pavir.3NG189700 2.0kb upstream 2.0kb upstream 7971 true Chr03N: 35282566-35290536 Panicum virgatum
Pavir.3NG189700 2.0kb upstream 2.0kb upstream 2000 false Chr03N: 35282566-35284565 Panicum virgatum
Pavir.3NG189700 2.0kb downstream 2.0kb downstream 7971 true Chr03N: 35284566-35292536 Panicum virgatum
Pavir.3NG189700 2.0kb downstream 2.0kb downstream 2000 false Chr03N: 35290537-35292536 Panicum virgatum
Pavir.3NG189700 5.0kb upstream 5.0kb upstream 10971 true Chr03N: 35279566-35290536 Panicum virgatum
Pavir.3NG189700 5.0kb upstream 5.0kb upstream 5000 false Chr03N: 35279566-35284565 Panicum virgatum
Pavir.3NG189700 5.0kb downstream 5.0kb downstream 10971 true Chr03N: 35284566-35295536 Panicum virgatum
Pavir.3NG189700 5.0kb downstream 5.0kb downstream 5000 false Chr03N: 35290537-35295536 Panicum virgatum
Pavir.3NG189700 10.0kb upstream 10.0kb upstream 15971 true Chr03N: 35274566-35290536 Panicum virgatum
Pavir.3NG189700 10.0kb upstream 10.0kb upstream 10000 false Chr03N: 35274566-35284565 Panicum virgatum
Pavir.3NG189700 10.0kb downstream 10.0kb downstream 15971 true Chr03N: 35284566-35300536 Panicum virgatum
Pavir.3NG189700 10.0kb downstream 10.0kb downstream 10000 false Chr03N: 35290537-35300536 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182665 5267 Panicoideae View MSA
124583290 5269 Grass View MSA
122045026 5273 Angiosperm View MSA
121345779 5274 Embryophyte View MSA
123427556 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain