Gene : Thecc1EG031836 T. cacao v1.1
Defline:  (1 of 3) PF13961//PF14227 - Domain of unknown function (DUF4219) (DUF4219) // gag-polypeptide of LTR copia-type (UBN2_2) Genomic Order:  1060
Name:  ? Thecc1EG031836 Secondary Identifier:  ? PAC:27444502
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG031836 0.5kb upstream 0.5kb upstream 1927 true scaffold_7: 7346298-7348224 Theobroma cacao
Thecc1EG031836 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 7346298-7346797 Theobroma cacao
Thecc1EG031836 0.5kb downstream 0.5kb downstream 1927 true scaffold_7: 7346798-7348724 Theobroma cacao
Thecc1EG031836 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 7348225-7348724 Theobroma cacao
Thecc1EG031836 1.0kb upstream 1.0kb upstream 2427 true scaffold_7: 7345798-7348224 Theobroma cacao
Thecc1EG031836 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 7345798-7346797 Theobroma cacao
Thecc1EG031836 1.0kb downstream 1.0kb downstream 2427 true scaffold_7: 7346798-7349224 Theobroma cacao
Thecc1EG031836 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 7348225-7349224 Theobroma cacao
Thecc1EG031836 2.0kb upstream 2.0kb upstream 3427 true scaffold_7: 7344798-7348224 Theobroma cacao
Thecc1EG031836 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 7344798-7346797 Theobroma cacao
Thecc1EG031836 2.0kb downstream 2.0kb downstream 3427 true scaffold_7: 7346798-7350224 Theobroma cacao
Thecc1EG031836 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 7348225-7350224 Theobroma cacao
Thecc1EG031836 5.0kb upstream 5.0kb upstream 6427 true scaffold_7: 7341798-7348224 Theobroma cacao
Thecc1EG031836 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 7341798-7346797 Theobroma cacao
Thecc1EG031836 5.0kb downstream 5.0kb downstream 6427 true scaffold_7: 7346798-7353224 Theobroma cacao
Thecc1EG031836 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 7348225-7353224 Theobroma cacao
Thecc1EG031836 10.0kb upstream 10.0kb upstream 11427 true scaffold_7: 7336798-7348224 Theobroma cacao
Thecc1EG031836 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 7336798-7346797 Theobroma cacao
Thecc1EG031836 10.0kb downstream 10.0kb downstream 11427 true scaffold_7: 7346798-7358224 Theobroma cacao
Thecc1EG031836 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 7348225-7358224 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123841161 5264 Brassicales-Malvales View MSA
124351377 5266 SBM View MSA
124253923 5268 Malvidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain