Gene : Sobic.008G179700 S. bicolor v3.1.1
Defline:  (1 of 3) K03120 - transcription initiation factor TFIID TATA-box-binding protein (TBP, tbp) Genomic Order:  1883
Name:  ? Sobic.008G179700 Secondary Identifier:  ? PAC:37928420
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.008G179700 0.5kb upstream 0.5kb upstream 4548   true Chr08: 61310164-61314711 Sorghum bicolor
Sobic.008G179700 0.5kb upstream 0.5kb upstream 500   false Chr08: 61310164-61310663 Sorghum bicolor
Sobic.008G179700 0.5kb downstream 0.5kb downstream 4548   true Chr08: 61310664-61315211 Sorghum bicolor
Sobic.008G179700 0.5kb downstream 0.5kb downstream 500   false Chr08: 61314712-61315211 Sorghum bicolor
Sobic.008G179700 1.0kb upstream 1.0kb upstream 5048   true Chr08: 61309664-61314711 Sorghum bicolor
Sobic.008G179700 1.0kb upstream 1.0kb upstream 1000   false Chr08: 61309664-61310663 Sorghum bicolor
Sobic.008G179700 1.0kb downstream 1.0kb downstream 5048   true Chr08: 61310664-61315711 Sorghum bicolor
Sobic.008G179700 1.0kb downstream 1.0kb downstream 1000   false Chr08: 61314712-61315711 Sorghum bicolor
Sobic.008G179700 2.0kb upstream 2.0kb upstream 6048   true Chr08: 61308664-61314711 Sorghum bicolor
Sobic.008G179700 2.0kb upstream 2.0kb upstream 2000   false Chr08: 61308664-61310663 Sorghum bicolor
Sobic.008G179700 2.0kb downstream 2.0kb downstream 6048   true Chr08: 61310664-61316711 Sorghum bicolor
Sobic.008G179700 2.0kb downstream 2.0kb downstream 2000   false Chr08: 61314712-61316711 Sorghum bicolor
Sobic.008G179700 5.0kb upstream 5.0kb upstream 9048   true Chr08: 61305664-61314711 Sorghum bicolor
Sobic.008G179700 5.0kb upstream 5.0kb upstream 5000   false Chr08: 61305664-61310663 Sorghum bicolor
Sobic.008G179700 5.0kb downstream 5.0kb downstream 9048   true Chr08: 61310664-61319711 Sorghum bicolor
Sobic.008G179700 5.0kb downstream 5.0kb downstream 5000   false Chr08: 61314712-61319711 Sorghum bicolor
Sobic.008G179700 10.0kb upstream 10.0kb upstream 14048   true Chr08: 61300664-61314711 Sorghum bicolor
Sobic.008G179700 10.0kb upstream 10.0kb upstream 10000   false Chr08: 61300664-61310663 Sorghum bicolor
Sobic.008G179700 10.0kb downstream 10.0kb downstream 14048   true Chr08: 61310664-61324711 Sorghum bicolor
Sobic.008G179700 10.0kb downstream 10.0kb downstream 10000   false Chr08: 61314712-61324711 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199665 5267 Panicoideae View MSA
124569114 5269 Grass View MSA
122046126 5273 Angiosperm View MSA
123429185 5275 Viridiplantae View MSA
121349658 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.541        
cufflinks 7.168     High Low
cufflinks 7.831        
cufflinks 10.776        
cufflinks 8.491        
cufflinks 13.917     High High
cufflinks 10.448        
cufflinks 6.629       Low
cufflinks 11.711        
cufflinks 12.487     High High
cufflinks 8.695        
cufflinks 12.602     High High
cufflinks 12.174     High High
cufflinks 8.001        
cufflinks 10.473        
cufflinks 13.027     High High
cufflinks 11.107        
cufflinks 11.937     High  
cufflinks 6.211       Low
cufflinks 13.459     High High
cufflinks 15.928     High High
cufflinks 9.115        
cufflinks 10.899        
cufflinks 10.559        
cufflinks 9.486     High  
cufflinks 6.305     High Low
cufflinks 8.558        
cufflinks 9.397        
cufflinks 8.275        
cufflinks 10.588        

0 Strain