Gene : Sobic.010G276400 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR31480//PTHR31480:SF2 - FAMILY NOT NAMED // PHYTOENE SYNTHASE, CHLOROPLASTIC Genomic Order:  2908
Name:  ? Sobic.010G276400 Secondary Identifier:  ? PAC:37910983
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor CAROTENOID-PWY Sorghum bicolor pathologic  
Sbicolor PWY-6475 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.010G276400 0.5kb upstream 0.5kb upstream 4400   true Chr10: 60960085-60964484 Sorghum bicolor
Sobic.010G276400 0.5kb upstream 0.5kb upstream 500   false Chr10: 60963985-60964484 Sorghum bicolor
Sobic.010G276400 0.5kb downstream 0.5kb downstream 4400   true Chr10: 60959585-60963984 Sorghum bicolor
Sobic.010G276400 0.5kb downstream 0.5kb downstream 500   false Chr10: 60959585-60960084 Sorghum bicolor
Sobic.010G276400 1.0kb upstream 1.0kb upstream 4900   true Chr10: 60960085-60964984 Sorghum bicolor
Sobic.010G276400 1.0kb upstream 1.0kb upstream 1000   false Chr10: 60963985-60964984 Sorghum bicolor
Sobic.010G276400 1.0kb downstream 1.0kb downstream 4900   true Chr10: 60959085-60963984 Sorghum bicolor
Sobic.010G276400 1.0kb downstream 1.0kb downstream 1000   false Chr10: 60959085-60960084 Sorghum bicolor
Sobic.010G276400 2.0kb upstream 2.0kb upstream 5900   true Chr10: 60960085-60965984 Sorghum bicolor
Sobic.010G276400 2.0kb upstream 2.0kb upstream 2000   false Chr10: 60963985-60965984 Sorghum bicolor
Sobic.010G276400 2.0kb downstream 2.0kb downstream 5900   true Chr10: 60958085-60963984 Sorghum bicolor
Sobic.010G276400 2.0kb downstream 2.0kb downstream 2000   false Chr10: 60958085-60960084 Sorghum bicolor
Sobic.010G276400 5.0kb upstream 5.0kb upstream 8900   true Chr10: 60960085-60968984 Sorghum bicolor
Sobic.010G276400 5.0kb upstream 5.0kb upstream 5000   false Chr10: 60963985-60968984 Sorghum bicolor
Sobic.010G276400 5.0kb downstream 5.0kb downstream 8900   true Chr10: 60955085-60963984 Sorghum bicolor
Sobic.010G276400 5.0kb downstream 5.0kb downstream 5000   false Chr10: 60955085-60960084 Sorghum bicolor
Sobic.010G276400 10.0kb upstream 10.0kb upstream 13900   true Chr10: 60960085-60973984 Sorghum bicolor
Sobic.010G276400 10.0kb upstream 10.0kb upstream 10000   false Chr10: 60963985-60973984 Sorghum bicolor
Sobic.010G276400 10.0kb downstream 10.0kb downstream 13900   true Chr10: 60950085-60963984 Sorghum bicolor
Sobic.010G276400 10.0kb downstream 10.0kb downstream 10000   false Chr10: 60950085-60960084 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041269 5273 Angiosperm View MSA
122180617 5267 Panicoideae View MSA
124577082 5269 Grass View MSA
121345575 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.105       Low
cufflinks 99.652     High High
cufflinks 20.784     High  
cufflinks 5.416        
cufflinks 2.594        
cufflinks 15.813     High  
cufflinks 54.84     High High
cufflinks 136.341     High High
cufflinks 3.943        
cufflinks 2.945        
cufflinks 1.691        
cufflinks 1.044        
cufflinks 4.663        
cufflinks 0.749        
cufflinks 9.092        
cufflinks 35.417     High  
cufflinks 66.376     High High
cufflinks 54.988     High High
cufflinks 47.67     High High
cufflinks 40.874     High High
cufflinks 2.179        
cufflinks 0.537       Low
cufflinks 0.474       Low
cufflinks 0.563       Low
cufflinks 26.811     High  
cufflinks 158.116     High High
cufflinks 0.885        
cufflinks 0.013     Low Low
cufflinks 53.109     High High
cufflinks 4.929        

0 Strain