Gene : Sobic.003G179100 S. bicolor v3.1.1
Defline:  (1 of 1) K12821 - pre-mRNA-processing factor 40 (PRPF40, PRP40) Genomic Order:  1884
Name:  ? Sobic.003G179100 Secondary Identifier:  ? PAC:37913037
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G179100 0.5kb upstream 0.5kb upstream 23067 true Chr03: 46598849-46621915 Sorghum bicolor
Sobic.003G179100 0.5kb upstream 0.5kb upstream 500 false Chr03: 46621416-46621915 Sorghum bicolor
Sobic.003G179100 0.5kb downstream 0.5kb downstream 23067 true Chr03: 46598349-46621415 Sorghum bicolor
Sobic.003G179100 0.5kb downstream 0.5kb downstream 500 false Chr03: 46598349-46598848 Sorghum bicolor
Sobic.003G179100 1.0kb upstream 1.0kb upstream 23567 true Chr03: 46598849-46622415 Sorghum bicolor
Sobic.003G179100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 46621416-46622415 Sorghum bicolor
Sobic.003G179100 1.0kb downstream 1.0kb downstream 23567 true Chr03: 46597849-46621415 Sorghum bicolor
Sobic.003G179100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 46597849-46598848 Sorghum bicolor
Sobic.003G179100 2.0kb upstream 2.0kb upstream 24567 true Chr03: 46598849-46623415 Sorghum bicolor
Sobic.003G179100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 46621416-46623415 Sorghum bicolor
Sobic.003G179100 2.0kb downstream 2.0kb downstream 24567 true Chr03: 46596849-46621415 Sorghum bicolor
Sobic.003G179100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 46596849-46598848 Sorghum bicolor
Sobic.003G179100 5.0kb upstream 5.0kb upstream 27567 true Chr03: 46598849-46626415 Sorghum bicolor
Sobic.003G179100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 46621416-46626415 Sorghum bicolor
Sobic.003G179100 5.0kb downstream 5.0kb downstream 27567 true Chr03: 46593849-46621415 Sorghum bicolor
Sobic.003G179100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 46593849-46598848 Sorghum bicolor
Sobic.003G179100 10.0kb upstream 10.0kb upstream 32567 true Chr03: 46598849-46631415 Sorghum bicolor
Sobic.003G179100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 46621416-46631415 Sorghum bicolor
Sobic.003G179100 10.0kb downstream 10.0kb downstream 32567 true Chr03: 46588849-46621415 Sorghum bicolor
Sobic.003G179100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 46588849-46598848 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180105 5267 Panicoideae View MSA
124583371 5269 Grass View MSA
122049454 5273 Angiosperm View MSA
121347556 5274 Embryophyte View MSA
123423988 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.607       Low
cufflinks 0.657       Low
cufflinks 1.02        
cufflinks 0.966        
cufflinks 1.244       High
cufflinks 0.94        
cufflinks 0.942        
cufflinks 0.618       Low
cufflinks 1.183        
cufflinks 0.981        
cufflinks 1.131        
cufflinks 1.255       High
cufflinks 0.933        
cufflinks 1.086        
cufflinks 1.041        
cufflinks 0.914        
cufflinks 0.94        
cufflinks 0.958        
cufflinks 1.111        
cufflinks 1.037        
cufflinks 1.646       High
cufflinks 0.983        
cufflinks 1.14        
cufflinks 1.065        
cufflinks 1.003        
cufflinks 0.648       Low
cufflinks 0.837        
cufflinks 0.668       Low
cufflinks 0.721       Low
cufflinks 1.067        

0 Strain