Gene : Sobic.001G087100 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR24423:SF493 - PHYTOCHROME C Genomic Order:  890
Name:  ? Sobic.001G087100 Secondary Identifier:  ? PAC:37943460
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G087100 0.5kb upstream 0.5kb upstream 5886 true Chr01: 6748036-6753921 Sorghum bicolor
Sobic.001G087100 0.5kb upstream 0.5kb upstream 500 false Chr01: 6753422-6753921 Sorghum bicolor
Sobic.001G087100 0.5kb downstream 0.5kb downstream 5886 true Chr01: 6747536-6753421 Sorghum bicolor
Sobic.001G087100 0.5kb downstream 0.5kb downstream 500 false Chr01: 6747536-6748035 Sorghum bicolor
Sobic.001G087100 1.0kb upstream 1.0kb upstream 6386 true Chr01: 6748036-6754421 Sorghum bicolor
Sobic.001G087100 1.0kb upstream 1.0kb upstream 1000 false Chr01: 6753422-6754421 Sorghum bicolor
Sobic.001G087100 1.0kb downstream 1.0kb downstream 6386 true Chr01: 6747036-6753421 Sorghum bicolor
Sobic.001G087100 1.0kb downstream 1.0kb downstream 1000 false Chr01: 6747036-6748035 Sorghum bicolor
Sobic.001G087100 2.0kb upstream 2.0kb upstream 7386 true Chr01: 6748036-6755421 Sorghum bicolor
Sobic.001G087100 2.0kb upstream 2.0kb upstream 2000 false Chr01: 6753422-6755421 Sorghum bicolor
Sobic.001G087100 2.0kb downstream 2.0kb downstream 7386 true Chr01: 6746036-6753421 Sorghum bicolor
Sobic.001G087100 2.0kb downstream 2.0kb downstream 2000 false Chr01: 6746036-6748035 Sorghum bicolor
Sobic.001G087100 5.0kb upstream 5.0kb upstream 10386 true Chr01: 6748036-6758421 Sorghum bicolor
Sobic.001G087100 5.0kb upstream 5.0kb upstream 5000 false Chr01: 6753422-6758421 Sorghum bicolor
Sobic.001G087100 5.0kb downstream 5.0kb downstream 10386 true Chr01: 6743036-6753421 Sorghum bicolor
Sobic.001G087100 5.0kb downstream 5.0kb downstream 5000 false Chr01: 6743036-6748035 Sorghum bicolor
Sobic.001G087100 10.0kb upstream 10.0kb upstream 15386 true Chr01: 6748036-6763421 Sorghum bicolor
Sobic.001G087100 10.0kb upstream 10.0kb upstream 10000 false Chr01: 6753422-6763421 Sorghum bicolor
Sobic.001G087100 10.0kb downstream 10.0kb downstream 15386 true Chr01: 6738036-6753421 Sorghum bicolor
Sobic.001G087100 10.0kb downstream 10.0kb downstream 10000 false Chr01: 6738036-6748035 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026532 5273 Angiosperm View MSA
122189026 5267 Panicoideae View MSA
124569853 5269 Grass View MSA
121350342 5274 Embryophyte View MSA
123381687 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.071       Low
cufflinks 2.04       Low
cufflinks 2.949       Low
cufflinks 5.345        
cufflinks 14.415     High High
cufflinks 5.457        
cufflinks 10.195        
cufflinks 9.74     High  
cufflinks 14.331     High High
cufflinks 13.657     High  
cufflinks 9.365        
cufflinks 10.522        
cufflinks 9.365        
cufflinks 10.849        
cufflinks 11.344        
cufflinks 5.727        
cufflinks 9.964        
cufflinks 9.861        
cufflinks 7.316        
cufflinks 8.744        
cufflinks 16.344     High High
cufflinks 8.761        
cufflinks 9.899        
cufflinks 9.993        
cufflinks 3.956       Low
cufflinks 3.983       Low
cufflinks 11.829     High  
cufflinks 3.967       Low
cufflinks 11.826     High  
cufflinks 10.172        

0 Strain