Gene : Sobic.006G094201 S. bicolor v3.1.1
Defline:  (1 of 3) PTHR23160:SF3 - SYNAPTONEMAL COMPLEX PROTEIN 1-RELATED Genomic Order:  978
Name:  ? Sobic.006G094201 Secondary Identifier:  ? PAC:37948644
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G094201 0.5kb upstream 0.5kb upstream 12021 true Chr06: 46395866-46407886 Sorghum bicolor
Sobic.006G094201 0.5kb upstream 0.5kb upstream 500 false Chr06: 46395866-46396365 Sorghum bicolor
Sobic.006G094201 0.5kb downstream 0.5kb downstream 12021 true Chr06: 46396366-46408386 Sorghum bicolor
Sobic.006G094201 0.5kb downstream 0.5kb downstream 500 false Chr06: 46407887-46408386 Sorghum bicolor
Sobic.006G094201 1.0kb upstream 1.0kb upstream 12521 true Chr06: 46395366-46407886 Sorghum bicolor
Sobic.006G094201 1.0kb upstream 1.0kb upstream 1000 false Chr06: 46395366-46396365 Sorghum bicolor
Sobic.006G094201 1.0kb downstream 1.0kb downstream 12521 true Chr06: 46396366-46408886 Sorghum bicolor
Sobic.006G094201 1.0kb downstream 1.0kb downstream 1000 false Chr06: 46407887-46408886 Sorghum bicolor
Sobic.006G094201 2.0kb upstream 2.0kb upstream 13521 true Chr06: 46394366-46407886 Sorghum bicolor
Sobic.006G094201 2.0kb upstream 2.0kb upstream 2000 false Chr06: 46394366-46396365 Sorghum bicolor
Sobic.006G094201 2.0kb downstream 2.0kb downstream 13521 true Chr06: 46396366-46409886 Sorghum bicolor
Sobic.006G094201 2.0kb downstream 2.0kb downstream 2000 false Chr06: 46407887-46409886 Sorghum bicolor
Sobic.006G094201 5.0kb upstream 5.0kb upstream 16521 true Chr06: 46391366-46407886 Sorghum bicolor
Sobic.006G094201 5.0kb upstream 5.0kb upstream 5000 false Chr06: 46391366-46396365 Sorghum bicolor
Sobic.006G094201 5.0kb downstream 5.0kb downstream 16521 true Chr06: 46396366-46412886 Sorghum bicolor
Sobic.006G094201 5.0kb downstream 5.0kb downstream 5000 false Chr06: 46407887-46412886 Sorghum bicolor
Sobic.006G094201 10.0kb upstream 10.0kb upstream 21521 true Chr06: 46386366-46407886 Sorghum bicolor
Sobic.006G094201 10.0kb upstream 10.0kb upstream 10000 false Chr06: 46386366-46396365 Sorghum bicolor
Sobic.006G094201 10.0kb downstream 10.0kb downstream 21521 true Chr06: 46396366-46417886 Sorghum bicolor
Sobic.006G094201 10.0kb downstream 10.0kb downstream 10000 false Chr06: 46407887-46417886 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181562 5267 Panicoideae View MSA
124580617 5269 Grass View MSA
122042808 5273 Angiosperm View MSA
121349481 5274 Embryophyte View MSA
123381327 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.019     Low  
cufflinks 0.02     Low  
cufflinks 0.025     Low  
cufflinks 0.023     Low  
cufflinks 0.044     Low High
cufflinks 0.002     Low Low
cufflinks 0.012     Low  
cufflinks 0.013     Low  
cufflinks 0.017     Low  
cufflinks 0.03     Low High
cufflinks 0.019     Low  
cufflinks 0.019     Low  
cufflinks 0.01     Low  
cufflinks 0.015     Low  
cufflinks 0.018     Low  
cufflinks 0.005     Low Low
cufflinks 0.02     Low  
cufflinks 0.013     Low  
cufflinks 0.008     Low Low
cufflinks 0.017     Low  
cufflinks 0.052     Low High
cufflinks 0.012     Low  
cufflinks 0.017     Low  
cufflinks 0.017     Low  
cufflinks 0.015     Low  
cufflinks 0.028     Low  
cufflinks 0.01     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low  
cufflinks 0.023     Low  

0 Strain