Gene : Sobic.004G228100 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR12313//PTHR12313:SF2 - RNF5 // E3 UBIQUITIN-PROTEIN LIGASE RMA3 Genomic Order:  2380
Name:  ? Sobic.004G228100 Secondary Identifier:  ? PAC:37933400
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G228100 0.5kb upstream 0.5kb upstream 4244 true Chr04: 57762508-57766751 Sorghum bicolor
Sobic.004G228100 0.5kb upstream 0.5kb upstream 500 false Chr04: 57766252-57766751 Sorghum bicolor
Sobic.004G228100 0.5kb downstream 0.5kb downstream 4244 true Chr04: 57762008-57766251 Sorghum bicolor
Sobic.004G228100 0.5kb downstream 0.5kb downstream 500 false Chr04: 57762008-57762507 Sorghum bicolor
Sobic.004G228100 1.0kb upstream 1.0kb upstream 4744 true Chr04: 57762508-57767251 Sorghum bicolor
Sobic.004G228100 1.0kb upstream 1.0kb upstream 1000 false Chr04: 57766252-57767251 Sorghum bicolor
Sobic.004G228100 1.0kb downstream 1.0kb downstream 4744 true Chr04: 57761508-57766251 Sorghum bicolor
Sobic.004G228100 1.0kb downstream 1.0kb downstream 1000 false Chr04: 57761508-57762507 Sorghum bicolor
Sobic.004G228100 2.0kb upstream 2.0kb upstream 5744 true Chr04: 57762508-57768251 Sorghum bicolor
Sobic.004G228100 2.0kb upstream 2.0kb upstream 2000 false Chr04: 57766252-57768251 Sorghum bicolor
Sobic.004G228100 2.0kb downstream 2.0kb downstream 5744 true Chr04: 57760508-57766251 Sorghum bicolor
Sobic.004G228100 2.0kb downstream 2.0kb downstream 2000 false Chr04: 57760508-57762507 Sorghum bicolor
Sobic.004G228100 5.0kb upstream 5.0kb upstream 8744 true Chr04: 57762508-57771251 Sorghum bicolor
Sobic.004G228100 5.0kb upstream 5.0kb upstream 5000 false Chr04: 57766252-57771251 Sorghum bicolor
Sobic.004G228100 5.0kb downstream 5.0kb downstream 8744 true Chr04: 57757508-57766251 Sorghum bicolor
Sobic.004G228100 5.0kb downstream 5.0kb downstream 5000 false Chr04: 57757508-57762507 Sorghum bicolor
Sobic.004G228100 10.0kb upstream 10.0kb upstream 13744 true Chr04: 57762508-57776251 Sorghum bicolor
Sobic.004G228100 10.0kb upstream 10.0kb upstream 10000 false Chr04: 57766252-57776251 Sorghum bicolor
Sobic.004G228100 10.0kb downstream 10.0kb downstream 13744 true Chr04: 57752508-57766251 Sorghum bicolor
Sobic.004G228100 10.0kb downstream 10.0kb downstream 10000 false Chr04: 57752508-57762507 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176448 5267 Panicoideae View MSA
124591154 5269 Grass View MSA
122051949 5273 Angiosperm View MSA
121312825 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.276       High
cufflinks 0.401        
cufflinks 0.465        
cufflinks 0.666        
cufflinks 0.174       Low
cufflinks 0.694        
cufflinks 0.408        
cufflinks 0.706        
cufflinks 0.558        
cufflinks 0.582        
cufflinks 0.357        
cufflinks 0.623        
cufflinks 0.531        
cufflinks 0.957        
cufflinks 1.135       High
cufflinks 1.566       High
cufflinks 0.423        
cufflinks 0.537        
cufflinks 1.2       High
cufflinks 0.512        
cufflinks 0.489        
cufflinks 0.389        
cufflinks 0.291        
cufflinks 0.295        
cufflinks 0.908        
cufflinks 0.615        
cufflinks 0.42        
cufflinks 1.212       High
cufflinks 0.592        
cufflinks 0.905        

0 Strain