Gene : Sobic.004G269600 S. bicolor v3.1.1
Defline:  (1 of 1) PF01535//PF03161 - PPR repeat (PPR) // LAGLIDADG DNA endonuclease family (LAGLIDADG_2) Genomic Order:  2820
Name:  ? Sobic.004G269600 Secondary Identifier:  ? PAC:37932983
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G269600 0.5kb upstream 0.5kb upstream 3535 true Chr04: 61376404-61379938 Sorghum bicolor
Sobic.004G269600 0.5kb upstream 0.5kb upstream 500 false Chr04: 61379439-61379938 Sorghum bicolor
Sobic.004G269600 0.5kb downstream 0.5kb downstream 3535 true Chr04: 61375904-61379438 Sorghum bicolor
Sobic.004G269600 0.5kb downstream 0.5kb downstream 500 false Chr04: 61375904-61376403 Sorghum bicolor
Sobic.004G269600 1.0kb upstream 1.0kb upstream 4035 true Chr04: 61376404-61380438 Sorghum bicolor
Sobic.004G269600 1.0kb upstream 1.0kb upstream 1000 false Chr04: 61379439-61380438 Sorghum bicolor
Sobic.004G269600 1.0kb downstream 1.0kb downstream 4035 true Chr04: 61375404-61379438 Sorghum bicolor
Sobic.004G269600 1.0kb downstream 1.0kb downstream 1000 false Chr04: 61375404-61376403 Sorghum bicolor
Sobic.004G269600 2.0kb upstream 2.0kb upstream 5035 true Chr04: 61376404-61381438 Sorghum bicolor
Sobic.004G269600 2.0kb upstream 2.0kb upstream 2000 false Chr04: 61379439-61381438 Sorghum bicolor
Sobic.004G269600 2.0kb downstream 2.0kb downstream 5035 true Chr04: 61374404-61379438 Sorghum bicolor
Sobic.004G269600 2.0kb downstream 2.0kb downstream 2000 false Chr04: 61374404-61376403 Sorghum bicolor
Sobic.004G269600 5.0kb upstream 5.0kb upstream 8035 true Chr04: 61376404-61384438 Sorghum bicolor
Sobic.004G269600 5.0kb upstream 5.0kb upstream 5000 false Chr04: 61379439-61384438 Sorghum bicolor
Sobic.004G269600 5.0kb downstream 5.0kb downstream 8035 true Chr04: 61371404-61379438 Sorghum bicolor
Sobic.004G269600 5.0kb downstream 5.0kb downstream 5000 false Chr04: 61371404-61376403 Sorghum bicolor
Sobic.004G269600 10.0kb upstream 10.0kb upstream 13035 true Chr04: 61376404-61389438 Sorghum bicolor
Sobic.004G269600 10.0kb upstream 10.0kb upstream 10000 false Chr04: 61379439-61389438 Sorghum bicolor
Sobic.004G269600 10.0kb downstream 10.0kb downstream 13035 true Chr04: 61366404-61379438 Sorghum bicolor
Sobic.004G269600 10.0kb downstream 10.0kb downstream 10000 false Chr04: 61366404-61376403 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184841 5267 Panicoideae View MSA
124569392 5269 Grass View MSA
122047377 5273 Angiosperm View MSA
121348028 5274 Embryophyte View MSA
123380709 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.425        
cufflinks 1.242        
cufflinks 3.111        
cufflinks 2.945        
cufflinks 1.966        
cufflinks 4.076        
cufflinks 5.08       High
cufflinks 3.534        
cufflinks 2.504        
cufflinks 1.92        
cufflinks 0.389       Low
cufflinks 0.792        
cufflinks 1.46        
cufflinks 0.4       Low
cufflinks 1.964        
cufflinks 2.851        
cufflinks 5.786       High
cufflinks 6.797       High
cufflinks 1.846        
cufflinks 4.507       High
cufflinks 2.841        
cufflinks 0.578       Low
cufflinks 0.495       Low
cufflinks 0.55       Low
cufflinks 1.722        
cufflinks 1.26        
cufflinks 0.588       Low
cufflinks 1.934        
cufflinks 15.514     High High
cufflinks 3.14        

0 Strain