Gene : Lsat_1_v5_gn_1_581 L. sativa V8
Defline:  (1 of 1) PTHR11864//PTHR11864:SF0 - PRE-MRNA-PROCESSING PROTEIN PRP40 // PRP40 PRE-MRNA PROCESSING FACTOR 40 HOMOLOG A (YEAST) Genomic Order:  14
Name:  ? Lsat_1_v5_gn_1_581 Secondary Identifier:  ? PAC:38945600
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_1_581 0.5kb upstream 0.5kb upstream 7716   true Lsat_1_v8_lg_1: 814956-822671 Lactuca sativa
Lsat_1_v5_gn_1_581 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_1: 822172-822671 Lactuca sativa
Lsat_1_v5_gn_1_581 0.5kb downstream 0.5kb downstream 7716   true Lsat_1_v8_lg_1: 814456-822171 Lactuca sativa
Lsat_1_v5_gn_1_581 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_1: 814456-814955 Lactuca sativa
Lsat_1_v5_gn_1_581 1.0kb upstream 1.0kb upstream 8216   true Lsat_1_v8_lg_1: 814956-823171 Lactuca sativa
Lsat_1_v5_gn_1_581 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_1: 822172-823171 Lactuca sativa
Lsat_1_v5_gn_1_581 1.0kb downstream 1.0kb downstream 8216   true Lsat_1_v8_lg_1: 813956-822171 Lactuca sativa
Lsat_1_v5_gn_1_581 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_1: 813956-814955 Lactuca sativa
Lsat_1_v5_gn_1_581 2.0kb upstream 2.0kb upstream 9216   true Lsat_1_v8_lg_1: 814956-824171 Lactuca sativa
Lsat_1_v5_gn_1_581 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_1: 822172-824171 Lactuca sativa
Lsat_1_v5_gn_1_581 2.0kb downstream 2.0kb downstream 9216   true Lsat_1_v8_lg_1: 812956-822171 Lactuca sativa
Lsat_1_v5_gn_1_581 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_1: 812956-814955 Lactuca sativa
Lsat_1_v5_gn_1_581 5.0kb upstream 5.0kb upstream 12216   true Lsat_1_v8_lg_1: 814956-827171 Lactuca sativa
Lsat_1_v5_gn_1_581 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_1: 822172-827171 Lactuca sativa
Lsat_1_v5_gn_1_581 5.0kb downstream 5.0kb downstream 12216   true Lsat_1_v8_lg_1: 809956-822171 Lactuca sativa
Lsat_1_v5_gn_1_581 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_1: 809956-814955 Lactuca sativa
Lsat_1_v5_gn_1_581 10.0kb upstream 10.0kb upstream 17216   true Lsat_1_v8_lg_1: 814956-832171 Lactuca sativa
Lsat_1_v5_gn_1_581 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_1: 822172-832171 Lactuca sativa
Lsat_1_v5_gn_1_581 10.0kb downstream 10.0kb downstream 17216   true Lsat_1_v8_lg_1: 804956-822171 Lactuca sativa
Lsat_1_v5_gn_1_581 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_1: 804956-814955 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121469821 5263 Asterids View MSA
123741058 5271 Pentapetalae View MSA
122797131 5272 Eudicot View MSA
122049454 5273 Angiosperm View MSA
121347556 5274 Embryophyte View MSA
123423988 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain