Gene : Lsat_1_v5_gn_2_53860 L. sativa V8
Defline:  (1 of 7) PTHR22849:SF38 - E3 UBIQUITIN-PROTEIN LIGASE PUB22-RELATED Genomic Order:  1395
Name:  ? Lsat_1_v5_gn_2_53860 Secondary Identifier:  ? PAC:38960872
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-7511 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_2_53860 0.5kb upstream 0.5kb upstream 2023   true Lsat_1_v8_lg_2: 116624360-116626382 Lactuca sativa
Lsat_1_v5_gn_2_53860 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_2: 116625883-116626382 Lactuca sativa
Lsat_1_v5_gn_2_53860 0.5kb downstream 0.5kb downstream 2023   true Lsat_1_v8_lg_2: 116623860-116625882 Lactuca sativa
Lsat_1_v5_gn_2_53860 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_2: 116623860-116624359 Lactuca sativa
Lsat_1_v5_gn_2_53860 1.0kb upstream 1.0kb upstream 2523   true Lsat_1_v8_lg_2: 116624360-116626882 Lactuca sativa
Lsat_1_v5_gn_2_53860 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_2: 116625883-116626882 Lactuca sativa
Lsat_1_v5_gn_2_53860 1.0kb downstream 1.0kb downstream 2523   true Lsat_1_v8_lg_2: 116623360-116625882 Lactuca sativa
Lsat_1_v5_gn_2_53860 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_2: 116623360-116624359 Lactuca sativa
Lsat_1_v5_gn_2_53860 2.0kb upstream 2.0kb upstream 3523   true Lsat_1_v8_lg_2: 116624360-116627882 Lactuca sativa
Lsat_1_v5_gn_2_53860 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_2: 116625883-116627882 Lactuca sativa
Lsat_1_v5_gn_2_53860 2.0kb downstream 2.0kb downstream 3523   true Lsat_1_v8_lg_2: 116622360-116625882 Lactuca sativa
Lsat_1_v5_gn_2_53860 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_2: 116622360-116624359 Lactuca sativa
Lsat_1_v5_gn_2_53860 5.0kb upstream 5.0kb upstream 6523   true Lsat_1_v8_lg_2: 116624360-116630882 Lactuca sativa
Lsat_1_v5_gn_2_53860 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_2: 116625883-116630882 Lactuca sativa
Lsat_1_v5_gn_2_53860 5.0kb downstream 5.0kb downstream 6523   true Lsat_1_v8_lg_2: 116619360-116625882 Lactuca sativa
Lsat_1_v5_gn_2_53860 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_2: 116619360-116624359 Lactuca sativa
Lsat_1_v5_gn_2_53860 10.0kb upstream 10.0kb upstream 11523   true Lsat_1_v8_lg_2: 116624360-116635882 Lactuca sativa
Lsat_1_v5_gn_2_53860 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_2: 116625883-116635882 Lactuca sativa
Lsat_1_v5_gn_2_53860 10.0kb downstream 10.0kb downstream 11523   true Lsat_1_v8_lg_2: 116614360-116625882 Lactuca sativa
Lsat_1_v5_gn_2_53860 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_2: 116614360-116624359 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121475763 5263 Asterids View MSA
123752134 5271 Pentapetalae View MSA
122795209 5272 Eudicot View MSA
122048631 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain