Gene : Lsat_1_v5_gn_6_108420 L. sativa V8
Defline:  (1 of 3) PTHR11864//PTHR11864:SF21 - PRE-MRNA-PROCESSING PROTEIN PRP40 // SUBFAMILY NOT NAMED Genomic Order:  3118
Name:  ? Lsat_1_v5_gn_6_108420 Secondary Identifier:  ? PAC:38936874
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_6_108420 0.5kb upstream 0.5kb upstream 6880   true Lsat_1_v8_lg_6: 178538549-178545428 Lactuca sativa
Lsat_1_v5_gn_6_108420 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_6: 178538549-178539048 Lactuca sativa
Lsat_1_v5_gn_6_108420 0.5kb downstream 0.5kb downstream 6880   true Lsat_1_v8_lg_6: 178539049-178545928 Lactuca sativa
Lsat_1_v5_gn_6_108420 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_6: 178545429-178545928 Lactuca sativa
Lsat_1_v5_gn_6_108420 1.0kb upstream 1.0kb upstream 7380   true Lsat_1_v8_lg_6: 178538049-178545428 Lactuca sativa
Lsat_1_v5_gn_6_108420 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_6: 178538049-178539048 Lactuca sativa
Lsat_1_v5_gn_6_108420 1.0kb downstream 1.0kb downstream 7380   true Lsat_1_v8_lg_6: 178539049-178546428 Lactuca sativa
Lsat_1_v5_gn_6_108420 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_6: 178545429-178546428 Lactuca sativa
Lsat_1_v5_gn_6_108420 2.0kb upstream 2.0kb upstream 8380   true Lsat_1_v8_lg_6: 178537049-178545428 Lactuca sativa
Lsat_1_v5_gn_6_108420 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_6: 178537049-178539048 Lactuca sativa
Lsat_1_v5_gn_6_108420 2.0kb downstream 2.0kb downstream 8380   true Lsat_1_v8_lg_6: 178539049-178547428 Lactuca sativa
Lsat_1_v5_gn_6_108420 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_6: 178545429-178547428 Lactuca sativa
Lsat_1_v5_gn_6_108420 5.0kb upstream 5.0kb upstream 11380   true Lsat_1_v8_lg_6: 178534049-178545428 Lactuca sativa
Lsat_1_v5_gn_6_108420 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_6: 178534049-178539048 Lactuca sativa
Lsat_1_v5_gn_6_108420 5.0kb downstream 5.0kb downstream 11380   true Lsat_1_v8_lg_6: 178539049-178550428 Lactuca sativa
Lsat_1_v5_gn_6_108420 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_6: 178545429-178550428 Lactuca sativa
Lsat_1_v5_gn_6_108420 10.0kb upstream 10.0kb upstream 16380   true Lsat_1_v8_lg_6: 178529049-178545428 Lactuca sativa
Lsat_1_v5_gn_6_108420 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_6: 178529049-178539048 Lactuca sativa
Lsat_1_v5_gn_6_108420 10.0kb downstream 10.0kb downstream 16380   true Lsat_1_v8_lg_6: 178539049-178555428 Lactuca sativa
Lsat_1_v5_gn_6_108420 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_6: 178545429-178555428 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121469821 5263 Asterids View MSA
123741058 5271 Pentapetalae View MSA
122797131 5272 Eudicot View MSA
122049454 5273 Angiosperm View MSA
121347556 5274 Embryophyte View MSA
123423988 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain