Protein Family : RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 123837908

Method ID:  5264 Method Name:  Brassicales-Malvales
Sequence Alignment:  View MSA Member Count:  24

24 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
AT3G53500 (1 of 5) K12896 - splicing factor, arginine/serine-rich 7 (SFRS7) A. thaliana TAIR10 2746   Chr3: 19834343-19837088
AT2G37340 (1 of 1) KOG0114//KOG4207 - Predicted RNA-binding protein (RRM superfamily) // Predicted splicing factor, SR protein superfamily A. thaliana TAIR10 2554   Chr2: 15670147-15672700
Thhalv10017989m.g (1 of 6) KOG0114 - Predicted RNA-binding protein (RRM superfamily) E. salsugineum v1.0 2475   scaffold_10: 9173160-9175634
Thhalv10010597m.g (1 of 10) PTHR23147 - SERINE/ARGININE RICH SPLICING FACTOR E. salsugineum v1.0 3113   scaffold_16: 1060633-1063745
Thhalv10014414m.g (1 of 2) PTHR23147//PTHR23147:SF1 - SERINE/ARGININE RICH SPLICING FACTOR E. salsugineum v1.0 2525   scaffold_2: 609674-612198
Gorai.002G252500 (1 of 3) PTHR23147//PTHR23147:SF1 - SERINE/ARGININE RICH SPLICING FACTOR G. raimondii v2.1 3017   Chr02: 61563994-61567010
Gorai.010G203100 (1 of 3) PTHR23147//PTHR23147:SF1 - SERINE/ARGININE RICH SPLICING FACTOR G. raimondii v2.1 4337   Chr10: 56849505-56853841
Thecc1EG043024 (1 of 1) KOG0105//KOG0106//KOG0107 - Alternative splicing factor ASF/SF2 (RRM superfamily) // Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) // Alternative splicing factor SRp20/9G8 (RRM superfamily) T. cacao v1.1 4058   scaffold_10r: 3486109-3490166
Araha.3323s0005 (1 of 8) PTHR23147 - SERINE/ARGININE RICH SPLICING FACTOR A. halleri v1.1 3201   Scaffold3323: 21316-24516
Cagra.0612s0076 (1 of 5) KOG0107 - Alternative splicing factor SRp20/9G8 (RRM superfamily) C. grandiflora v1.1 2400   Scaffold612: 270057-272456
Cagra.0666s0010 (1 of 1) KOG0114//KOG4207 - Predicted RNA-binding protein (RRM superfamily) // Predicted splicing factor, SR protein superfamily C. grandiflora v1.1 2767   Scaffold666: 44030-46796
Cagra.2515s0049 (1 of 2) PTHR23147//PTHR23147:SF1 - SERINE/ARGININE RICH SPLICING FACTOR C. grandiflora v1.1 2029   Scaffold2515: 150898-152926
Brara.G01594 (1 of 13) PTHR23147 - SERINE/ARGININE RICH SPLICING FACTOR B. rapa FPsc v1.3 2449   A07: 15769220-15771668
Brara.C00084 (1 of 13) PTHR23147 - SERINE/ARGININE RICH SPLICING FACTOR B. rapa FPsc v1.3 2202   A03: 349347-351548
Brara.C01874 (1 of 3) PTHR23147//PTHR23147:SF1 - SERINE/ARGININE RICH SPLICING FACTOR B. rapa FPsc v1.3 2540   A03: 9237599-9240138
Brara.E03079 (1 of 1) KOG0105//KOG4207 - Alternative splicing factor ASF/SF2 (RRM superfamily) // Predicted splicing factor, SR protein superfamily B. rapa FPsc v1.3 2338   A05: 25499728-25502065
Bostr.11793s0043 (1 of 9) PTHR23147 - SERINE/ARGININE RICH SPLICING FACTOR B. stricta v1.2 2589   Scaffold11793: 191154-193742
Bostr.22252s0111 (1 of 9) PTHR23147 - SERINE/ARGININE RICH SPLICING FACTOR B. stricta v1.2 2009   Scaffold22252: 515143-517151
Bostr.23794s0350 (1 of 9) PTHR23147 - SERINE/ARGININE RICH SPLICING FACTOR B. stricta v1.2 2536   Scaffold23794: 2049908-2052443
AL4G33720 (1 of 5) K12896 - splicing factor, arginine/serine-rich 7 (SFRS7) A. lyrata v2.1 2615   scaffold_4: 17841053-17843667
AL5G34420 (1 of 5) K12896 - splicing factor, arginine/serine-rich 7 (SFRS7) A. lyrata v2.1 2525   scaffold_5: 16610817-16613341
Carub.0004s1925 (1 of 1) KOG0114//KOG4207 - Predicted RNA-binding protein (RRM superfamily) // Predicted splicing factor, SR protein superfamily C. rubella v1.1 2076   scaffold_4: 10693360-10695435
Carub.0005s2007 (1 of 1) PF00076//PF00098//PF13893 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Zinc knuckle (zf-CCHC) // RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_5) C. rubella v1.1 2051   scaffold_5: 9982641-9984691
Carub.0003s0868 (1 of 2) PTHR23147//PTHR23147:SF1 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED C. rubella v1.1 2013   scaffold_3: 2972276-2974288

24 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
Thhalv10014414m E. salsugineum v1.0 123837908 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 3 5264 Brassicales-Malvales
Carub.0004s1925.1.p C. rubella v1.1 123837908 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 3 5264 Brassicales-Malvales
AT3G53500.2 A. thaliana TAIR10 123837908 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 2 5264 Brassicales-Malvales
AT2G37340.1 A. thaliana TAIR10 123837908 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 2 5264 Brassicales-Malvales
Thhalv10010597m E. salsugineum v1.0 123837908 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 3 5264 Brassicales-Malvales
Thhalv10017989m E. salsugineum v1.0 123837908 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 3 5264 Brassicales-Malvales
Gorai.002G252500.1 G. raimondii v2.1 123837908 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 2 5264 Brassicales-Malvales
Gorai.010G203100.1 G. raimondii v2.1 123837908 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 2 5264 Brassicales-Malvales
Thecc1EG043024t1 T. cacao v1.1 123837908 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 1 5264 Brassicales-Malvales
Araha.3323s0005.1.p A. halleri v1.1 123837908 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 1 5264 Brassicales-Malvales
Cagra.2515s0049.1.p C. grandiflora v1.1 123837908 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 3 5264 Brassicales-Malvales
Cagra.0666s0010.1.p C. grandiflora v1.1 123837908 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 3 5264 Brassicales-Malvales
Cagra.0612s0076.1.p C. grandiflora v1.1 123837908 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 3 5264 Brassicales-Malvales
Brara.C01874.1.p B. rapa FPsc v1.3 123837908 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 4 5264 Brassicales-Malvales
Brara.C00084.1.p B. rapa FPsc v1.3 123837908 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 4 5264 Brassicales-Malvales
Brara.G01594.1.p B. rapa FPsc v1.3 123837908 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 4 5264 Brassicales-Malvales
Brara.E03079.1.p B. rapa FPsc v1.3 123837908 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 4 5264 Brassicales-Malvales
Bostr.22252s0111.1.p B. stricta v1.2 123837908 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 3 5264 Brassicales-Malvales
Bostr.11793s0043.1.p B. stricta v1.2 123837908 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 3 5264 Brassicales-Malvales
Bostr.23794s0350.1.p B. stricta v1.2 123837908 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 3 5264 Brassicales-Malvales
AL5G34420.t2 A. lyrata v2.1 123837908 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 2 5264 Brassicales-Malvales
AL4G33720.t2 A. lyrata v2.1 123837908 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 2 5264 Brassicales-Malvales
Carub.0005s2007.1.p C. rubella v1.1 123837908 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 3 5264 Brassicales-Malvales
Carub.0003s0868.1.p C. rubella v1.1 123837908 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 3 5264 Brassicales-Malvales